Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0980 ATGGCCTCCGACACCTTCTCCGACAAGAATGCTGTCTTCAGAAAACTCAAGACAAAGTCCGATAACAAGATGTGTTTCGATTGCAATGCAAAGAATCCAACTTGGGCGTCGGTTACATATGGGATCTTCCTCTGCATCGATTGCTCGGCTGTTCATCGCAGCCTTGGTGTGCACGTCAGCTTTGTGAGATCTACGAATTTAGACTCATGGACTCCTGAGCAGCTGAGAACAATGAGCTTTGGAGGAAACAATCGTGCACATGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGAAAAATCGAGGCCAAGTATACGTCTAGGGCTGCAGAGTTGTATAGACAACTTCTCTCCAAGGAAGTAGCTAAAAGTATGGCAGAGGAGGCAGGTTTACCATCCTCACCTGTTGCTTCCCAGTCTGCACAAGTGGCTAATGGACTTCCTGAAGTCAGGACCAATGAACCACCAAAAGAAAACATTTTGGAAAAGCCAGAAATGCCTGAGAGCATTGCTTCCCCTAAAGCTTCTCATATAACACTTTCCAGTACTGTCAAGAAACCTATTGGTGCCAAAAAAGGTGGCAAGACTGGGGGCCTTGGTGCCCGGAAGCTCACTAAAAAGCCGAGTGAATCTCTATATGAGCAAAAGCCACAAGAAGCACCTGCTCCCGTTTCTTCCTCATCAAGCAATGCTTTGACAGCTCGGCCACCCTTGACATCTCGGTTTGAGTATGTTGAAAATGTCCAGTCATCTGAGTTAAATTCAGGAGGAGATTCACACGTACATGGTCATGTGGCTCCACCAAAGTCATTGAGCTTTTTTGCTGATTTTGGGATGGATAGTGGCTTACCAAAACGGTCTGGGTCAAATTCCTCAAAAGTGCAAATTCAGGAATCTGATGAAGCAAGGAAGAAGTTCTCAAATGCTAAATCTATATCCTCAGCCCAATTTTTTGGAGATCAAAACAAAGCTGCCGATATGGAGAGTCAAGCTACTTTGGCAAAGTTATCGGGTTCAAGTGCCATCTCTAGTGCAGATCTTTTTGGTCACTCAGCTGATCCCTCCATTGATATCACTGCAAGTGACCTCATCAATCGACTCTCTTTCCAGGCACAGCAGGATATCTCTTCTATAAAAAACATGGCAGGAGAGACTGGGAAGAAGCTGAGTTCTTTGGCATCCACATTGATGACAGATCTTCAGGACAGAATCCTCTAA 1218 0.4507 MASDTFSDKNAVFRKLKTKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWTPEQLRTMSFGGNNRAHVFFKQHGWTDGGKIEAKYTSRAAELYRQLLSKEVAKSMAEEAGLPSSPVASQSAQVANGLPEVRTNEPPKENILEKPEMPESIASPKASHITLSSTVKKPIGAKKGGKTGGLGARKLTKKPSESLYEQKPQEAPAPVSSSSSNALTARPPLTSRFEYVENVQSSELNSGGDSHVHGHVAPPKSLSFFADFGMDSGLPKRSGSNSSKVQIQESDEARKKFSNAKSISSAQFFGDQNKAADMESQATLAKLSGSSAISSADLFGHSADPSIDITASDLINRLSFQAQQDISSIKNMAGETGKKLSSLASTLMTDLQDRIL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0980 405 Pfam Putative GTPase activating protein for Arf 12 110 IPR001164 GO:0005096
Lele50g0980 405 Gene3D Arf GTPase activating protein 1 137 IPR038508 -
Lele50g0980 405 MobiDBLite consensus disorder prediction 133 147 - -
Lele50g0980 405 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Lele50g0980 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Lele50g0980 405 MobiDBLite consensus disorder prediction 130 234 - -
Lele50g0980 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Lele50g0980 405 CDD ArfGap_ArfGap2_3_like 8 123 - -
Lele50g0980 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Lele50g0980 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Lele50g0980 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Lele50g0980 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Lele50g0980 405 MobiDBLite consensus disorder prediction 220 234 - -
Lele50g0980 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0980 Lele-ChrLele50 6202925 6207649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0980 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 2.08e-20 89.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0980 50 6202925 6207649 Lele50g0980 50 6202925 6207649 ECH
Lele50g0980 50 6202925 6207649 Lele51g0940 51 5869881 5874995 hybridization
Lele50g0980 50 6202925 6207649 Lele52g0958 52 6247248 6251961 hybridization