Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0970 ATGGCCACTTTAGAATCTGCACTCAGTGTCTTGGGATCTTTCCGTTGTTCTAATAATAAGTACTCTTCATCTGCAAAACCATTCGATTGGATAAAGCTCAACGTCTCCACTTCTCTTTTTTCCATTTCCCACAGTTGCGTCGTCCCTTCAATTTTCTCCTCCATCGACTCCAGCTCAAGGCTCTGCTTCGAATTATGCTCTGCGCTGCAAGAGGCGGCAACAGAAGAAAAACCGGAGCAAACCCAGGGAACCAACATAAAAAAGAAGCTCTACGTGTTCAATCTACCATGGTCGCTATCGGTGGCGGACATCAAGAATCTCTTCGGTCAATGCGGAACTGTAACCGATGTCGAGATAATAAAAAACCAAGATGGGAAGAGCAGAGGATTTGCCTTCGTCACTATGGCTTCCGGGGAAGAGGCTCAGACTGCTATTGATAAATTTGACTCTCATGAATTATCTGGCCGGATAATAAGAGTAGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTCCACGCCCTCCTAAAGCTCCCCCTGCTGGTGAAACTAGCCATAAAATTTATGCGTCCAATCTCGCCTGGAAAGCAAGATCTAGCCATCTCAGAGAATTCTTCGCAGAGAATTTCAAATCACCAGTTTCAGCCAGGGTTGTCTTTGACAGTCCTAATGGAAGATGTGCTGGGTATGGATTTGTTTCTTTTGCTACGAGGGATGAAGCAGAGGCCGTCATTTCTACTCTGGATGGGAAGGAATTAATGGGGCGACCACTTCGCCTAAAATTCAGTGAAAGGACTGTCAAAGAATCTGGGGATGATAAAGGAGAAGAGCAAAGTTCTGATGATGAACCGGCAGAATCATAG 861 0.4541 MATLESALSVLGSFRCSNNKYSSSAKPFDWIKLNVSTSLFSISHSCVVPSIFSSIDSSSRLCFELCSALQEAATEEKPEQTQGTNIKKKLYVFNLPWSLSVADIKNLFGQCGTVTDVEIIKNQDGKSRGFAFVTMASGEEAQTAIDKFDSHELSGRIIRVELAKRFKKPPPPRPPKAPPAGETSHKIYASNLAWKARSSHLREFFAENFKSPVSARVVFDSPNGRCAGYGFVSFATRDEAEAVISTLDGKELMGRPLRLKFSERTVKESGDDKGEEQSSDDEPAES 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0970 286 PANTHER OS02G0815200 PROTEIN 46 262 - -
Lele50g0970 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Lele50g0970 286 SUPERFAMILY RNA-binding domain, RBD 78 172 IPR035979 GO:0003676
Lele50g0970 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Lele50g0970 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 258 IPR000504 GO:0003723
Lele50g0970 286 SMART rrm1_1 186 260 IPR000504 GO:0003723
Lele50g0970 286 SMART rrm1_1 89 161 IPR000504 GO:0003723
Lele50g0970 286 Gene3D - 66 171 IPR012677 -
Lele50g0970 286 Gene3D - 172 279 IPR012677 -
Lele50g0970 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Lele50g0970 286 SUPERFAMILY RNA-binding domain, RBD 168 266 IPR035979 GO:0003676
Lele50g0970 286 MobiDBLite consensus disorder prediction 262 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0970 Lele-ChrLele50 6138787 6141524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0970 90 271 Eukaryotic Initiation Factors Gene Family AT4G34110 25.758 4.50e-12 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0970 50 6138787 6141524 Lele50g0970 50 6138787 6141524 ECH
Lele50g0970 50 6138787 6141524 Lele51g0931 51 5809026 5812307 hybridization
Lele50g0970 50 6138787 6141524 Lele52g0947 52 6168977 6171660 hybridization