Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele50g0970 | ATGGCCACTTTAGAATCTGCACTCAGTGTCTTGGGATCTTTCCGTTGTTCTAATAATAAGTACTCTTCATCTGCAAAACCATTCGATTGGATAAAGCTCAACGTCTCCACTTCTCTTTTTTCCATTTCCCACAGTTGCGTCGTCCCTTCAATTTTCTCCTCCATCGACTCCAGCTCAAGGCTCTGCTTCGAATTATGCTCTGCGCTGCAAGAGGCGGCAACAGAAGAAAAACCGGAGCAAACCCAGGGAACCAACATAAAAAAGAAGCTCTACGTGTTCAATCTACCATGGTCGCTATCGGTGGCGGACATCAAGAATCTCTTCGGTCAATGCGGAACTGTAACCGATGTCGAGATAATAAAAAACCAAGATGGGAAGAGCAGAGGATTTGCCTTCGTCACTATGGCTTCCGGGGAAGAGGCTCAGACTGCTATTGATAAATTTGACTCTCATGAATTATCTGGCCGGATAATAAGAGTAGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTCCACGCCCTCCTAAAGCTCCCCCTGCTGGTGAAACTAGCCATAAAATTTATGCGTCCAATCTCGCCTGGAAAGCAAGATCTAGCCATCTCAGAGAATTCTTCGCAGAGAATTTCAAATCACCAGTTTCAGCCAGGGTTGTCTTTGACAGTCCTAATGGAAGATGTGCTGGGTATGGATTTGTTTCTTTTGCTACGAGGGATGAAGCAGAGGCCGTCATTTCTACTCTGGATGGGAAGGAATTAATGGGGCGACCACTTCGCCTAAAATTCAGTGAAAGGACTGTCAAAGAATCTGGGGATGATAAAGGAGAAGAGCAAAGTTCTGATGATGAACCGGCAGAATCATAG | 861 | 0.4541 | MATLESALSVLGSFRCSNNKYSSSAKPFDWIKLNVSTSLFSISHSCVVPSIFSSIDSSSRLCFELCSALQEAATEEKPEQTQGTNIKKKLYVFNLPWSLSVADIKNLFGQCGTVTDVEIIKNQDGKSRGFAFVTMASGEEAQTAIDKFDSHELSGRIIRVELAKRFKKPPPPRPPKAPPAGETSHKIYASNLAWKARSSHLREFFAENFKSPVSARVVFDSPNGRCAGYGFVSFATRDEAEAVISTLDGKELMGRPLRLKFSERTVKESGDDKGEEQSSDDEPAES | 286 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele50g0970 | 286 | PANTHER | OS02G0815200 PROTEIN | 46 | 262 | - | - | |
Lele50g0970 | 286 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 88 | 165 | IPR000504 | GO:0003723 | |
Lele50g0970 | 286 | SUPERFAMILY | RNA-binding domain, RBD | 78 | 172 | IPR035979 | GO:0003676 | |
Lele50g0970 | 286 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 90 | 158 | IPR000504 | GO:0003723 | |
Lele50g0970 | 286 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 187 | 258 | IPR000504 | GO:0003723 | |
Lele50g0970 | 286 | SMART | rrm1_1 | 186 | 260 | IPR000504 | GO:0003723 | |
Lele50g0970 | 286 | SMART | rrm1_1 | 89 | 161 | IPR000504 | GO:0003723 | |
Lele50g0970 | 286 | Gene3D | - | 66 | 171 | IPR012677 | - | |
Lele50g0970 | 286 | Gene3D | - | 172 | 279 | IPR012677 | - | |
Lele50g0970 | 286 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 185 | 264 | IPR000504 | GO:0003723 | |
Lele50g0970 | 286 | SUPERFAMILY | RNA-binding domain, RBD | 168 | 266 | IPR035979 | GO:0003676 | |
Lele50g0970 | 286 | MobiDBLite | consensus disorder prediction | 262 | 286 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele50g0970 | Lele-ChrLele50 | 6138787 | 6141524 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele50g0970 | 90 | 271 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.758 | 4.50e-12 | 64.3 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele50g0970 | 50 | 6138787 | 6141524 | Lele50g0970 | 50 | 6138787 | 6141524 | ECH | |
Lele50g0970 | 50 | 6138787 | 6141524 | Lele51g0931 | 51 | 5809026 | 5812307 | hybridization | |
Lele50g0970 | 50 | 6138787 | 6141524 | Lele52g0947 | 52 | 6168977 | 6171660 | hybridization |