Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0969 ATGGCGGCGCTTGGAAACCCAAAAACTTGGATTCCTTACGTGAACATCAGAGATTGTTCTCAAGGTTTTTGCAGTGTTTACTGTCCACAGTGGTGTTATATAGTTCTTCCTCCTCCTCCTCCTCCTGCTCTCGATTTCACTCAAAATGAAGATTCTTCCCCAAATTTCTCTCCTCTTGTTATAGCCATAATTGGCATCTTGGCCAGTGCTTTCCTTCTGGTGAGTTATTACACTTTCATATCCAAGTACTGTGGAAACAGAGCAGGATCTTCTAACAGAGAGAATCTTCACCATAATGATGAGATTATTGAAGATAATGACAACCCTTCTTTGCATGAGCCATGGAATGTTCAAACCAATGGATTAGATGAAGCTCTGATAAAGTCGATCACAGTATGCAAGTACAAAAGAGGAGATGGGTTGATTGGTGTCACAGATTGCTCTGTTTGTCTCAGTGAGTTTCGAGAAGATGAACATGTCAGATTATTGCCTAAATGCAGTCACGCTTTTCACCTTCCTTGTATCGATCAATGGCTGAGATCTCACTCTAATTGCCCTCTCTGTCGTGCTCTTATCTTCACCTTCAATGCTTCTTCCACCCCTCAAGTGGTTCCATTTCCGCCTGTAATACAAGAAGAATCTTCCTCTGGATATGAATCTTCTTCTTCAAGGGAAATTCAGAATGCGAATGAAGAAAACAGAGCAGTTGGGGATATGGAAGAAGAAGATCGGAAGCCTTCGTTGCGCGCTTTTAGCGATCTGGGTTTTCTGCCAGGGAGACGTAGAATGATGATAGAGATGATCAGAGATGAAGGGGATGTTGAAGAAGACAATGAAGCCATAAGAAGGTCAGTGTCGATGGATCATCATTCGCTGCAAATTGGTGGAGTAGTATCTAATGAAGTAGGTACTTCAAAGAGATCTTCACAAGGAGAAAGTAGCAAGTCTAGTAGTAGCAGAAGAACTGTGCTTCTGCATTGTGTGTTGAGTCCAATCACAATGAAGAGATCATTTTCCAGTGGAAGATTCTCGTTTCGCAGAAATGGCAGAGCAAGGCAGGGGACTATCCCTGTCTGA 1077 0.4262 MAALGNPKTWIPYVNIRDCSQGFCSVYCPQWCYIVLPPPPPPALDFTQNEDSSPNFSPLVIAIIGILASAFLLVSYYTFISKYCGNRAGSSNRENLHHNDEIIEDNDNPSLHEPWNVQTNGLDEALIKSITVCKYKRGDGLIGVTDCSVCLSEFREDEHVRLLPKCSHAFHLPCIDQWLRSHSNCPLCRALIFTFNASSTPQVVPFPPVIQEESSSGYESSSSREIQNANEENRAVGDMEEEDRKPSLRAFSDLGFLPGRRRMMIEMIRDEGDVEEDNEAIRRSVSMDHHSLQIGGVVSNEVGTSKRSSQGESSKSSSSRRTVLLHCVLSPITMKRSFSSGRFSFRRNGRARQGTIPV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0969 358 PANTHER RING-H2 FINGER PROTEIN ATL16 42 322 IPR044600 GO:0016567|GO:0016740
Lele50g0969 358 MobiDBLite consensus disorder prediction 297 320 - -
Lele50g0969 358 SMART ring_2 147 188 IPR001841 -
Lele50g0969 358 SUPERFAMILY RING/U-box 146 195 - -
Lele50g0969 358 CDD RING-H2_PA-TM-RING 146 189 - -
Lele50g0969 358 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Lele50g0969 358 MobiDBLite consensus disorder prediction 211 245 - -
Lele50g0969 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 195 IPR013083 -
Lele50g0969 358 FunFam RING-H2 finger protein ATL54 122 195 - -
Lele50g0969 358 Pfam Ring finger domain 146 189 IPR001841 -
Lele50g0969 358 MobiDBLite consensus disorder prediction 213 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0969 Lele-ChrLele50 6134942 6136018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0969 6 358 C3H Transcription Factor Family AT5G17600 41.995 4.08e-71 224