Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0962 ATGGGGAAGAAGAAACCCAACGAGCCCCAGGAAACCCCTAAAAGCAAAGGTGCTTCCGACATATTTAGCAAGCTATTTGGTAATGTATCGGAACAGGGCGCCAGCTCTTCTCTATTCTCAGATTCCAACCCCTTTCGGAAGAGGACCCTTGAAACTGGTTCAAGTTTCAGCGTGACCAATAATACTGAAAACGTTGGTAGAGCGGTCTCCGATAGCCCCGATTCTGAGGTGCTGAAGAAGAGGAAGCAAAGGAAAGAGAAGAACTCGTCTATTGATTCAGATATTGCCGTTGAAGCTTCAGGGAAGAAGTCCAAATCTGGTTCTGACTTGAACGCTCATTCGATTCCCCAATCGAATAGCACACCGCAGGATGGCGAGGCGACTGCATTGTCGAAGAAGGAAAATATTGTGTCTAAGGAAGGAGAGCTTGTGGGCGAGGATAAGGAGAAGAGAAAGAAGAACAAGAGAAAAAGAGATGAGGTTGAGAAAGAGTGGGAATTGAAGAGGTATGGGGCAGTGGAGGAAGAGCAAGATGATGGGGAAGGCTTGGGGAAAAATGTTGTTGGGACCAAGAGGAAGACGGTGGATAATCCTGCCGACATGTTGGTAACGAATGAAGGTTTTGATGATGTAAAAAAGCTCTTGAGAACCATATTTGTTGGGAATTTACCGCTCAAGGTGAAAAAGAAGACTTTGTTGGCGGAGTTTAAGAAATTCGGGGAGGTTGAATCTGTGAGGATTCGTTCTGTTCCAATATTAGATACCAAAAAACCTAGAAAGGGAGCTATCCTTTCGAAGAAAATCAATGATGCTGGTGATAGTGTTCATGCATACATTGTTTTTAAGACAGAGCAGTCAGCTCAGGATTCTTTGTCCCATAACATGGCCATGGTTGGCGGAAATCACATTCGCGTTGATAGAGCATGCCCACCTCGAAAGAAACTTAAAGGAGAGCATACCCCACTGTATGATAACAAGAGAACTGTTTTTGTTGGCAACCTCCCTTTTGATGTAAAGGATGAAGAACTATATAAACTATTTTCTGGGATGTCCAACCTGGAATCCAGCATAGAAGCAGTTAGAGTCATTAGAGATCCTCATTTGAATATCGGGAAGGGTATTGCCTATGTGCTGTTTAAAACCAGGGAAGCTGCTAATTTTGTTGCTAGGAAACGGAACTTGAAGCTTCGAGACCGAGAGCTGAGACTCTGTCATGCAAAAGCGGATGCCACCCCATCCAAAAGGCCGAACTCGATGCCACCACAAGCTTCTGGTACTCCTGCAAAGAAGGCAGCCTTGGCTTCAAGGTCTCCTTCAAGCAGTGATAACAGGACAAACAAAAAATCCAATATGTCTTACCAAGGTTTGCGGGCAAACAAAACTGTTGCCCACAAGAAATCAAGAACCCATCATGGAGGGGAGCAAACCACAGAGCGCAAGACGAAACGACCATCAGTTGCTGCCAGAAAGGCTAAACTAAATGGAAAGTTGCCAAAGGAAGACGGTTCATCAAAACAAGCAGGAACGAAACGCAAGCTTGATAGTCGAACTCCAGACAGCGCTCTACGAAAGAAGAAATTTAAGAAGAATAGGTAG 1596 0.4474 MGKKKPNEPQETPKSKGASDIFSKLFGNVSEQGASSSLFSDSNPFRKRTLETGSSFSVTNNTENVGRAVSDSPDSEVLKKRKQRKEKNSSIDSDIAVEASGKKSKSGSDLNAHSIPQSNSTPQDGEATALSKKENIVSKEGELVGEDKEKRKKNKRKRDEVEKEWELKRYGAVEEEQDDGEGLGKNVVGTKRKTVDNPADMLVTNEGFDDVKKLLRTIFVGNLPLKVKKKTLLAEFKKFGEVESVRIRSVPILDTKKPRKGAILSKKINDAGDSVHAYIVFKTEQSAQDSLSHNMAMVGGNHIRVDRACPPRKKLKGEHTPLYDNKRTVFVGNLPFDVKDEELYKLFSGMSNLESSIEAVRVIRDPHLNIGKGIAYVLFKTREAANFVARKRNLKLRDRELRLCHAKADATPSKRPNSMPPQASGTPAKKAALASRSPSSSDNRTNKKSNMSYQGLRANKTVAHKKSRTHHGGEQTTERKTKRPSVAARKAKLNGKLPKEDGSSKQAGTKRKLDSRTPDSALRKKKFKKNR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0962 531 CDD RRM1_RBM34 216 306 IPR034220 -
Lele50g0962 531 SMART rrm1_1 217 306 IPR000504 GO:0003723
Lele50g0962 531 SMART rrm1_1 328 404 IPR000504 GO:0003723
Lele50g0962 531 MobiDBLite consensus disorder prediction 33 161 - -
Lele50g0962 531 MobiDBLite consensus disorder prediction 104 128 - -
Lele50g0962 531 Gene3D - 318 425 IPR012677 -
Lele50g0962 531 MobiDBLite consensus disorder prediction 33 69 - -
Lele50g0962 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 310 IPR000504 GO:0003723
Lele50g0962 531 SUPERFAMILY RNA-binding domain, RBD 323 418 IPR035979 GO:0003676
Lele50g0962 531 MobiDBLite consensus disorder prediction 493 521 - -
Lele50g0962 531 MobiDBLite consensus disorder prediction 73 92 - -
Lele50g0962 531 MobiDBLite consensus disorder prediction 405 531 - -
Lele50g0962 531 MobiDBLite consensus disorder prediction 468 484 - -
Lele50g0962 531 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 307 504 - -
Lele50g0962 531 Gene3D - 213 315 IPR012677 -
Lele50g0962 531 CDD RRM2_RBM34 328 403 IPR034221 -
Lele50g0962 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 327 408 IPR000504 GO:0003723
Lele50g0962 531 SUPERFAMILY RNA-binding domain, RBD 214 316 IPR035979 GO:0003676
Lele50g0962 531 MobiDBLite consensus disorder prediction 133 161 - -
Lele50g0962 531 MobiDBLite consensus disorder prediction 433 457 - -
Lele50g0962 531 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 260 IPR000504 GO:0003723
Lele50g0962 531 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 329 401 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0962 Lele-ChrLele50 6083366 6086345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0962 218 407 Eukaryotic Initiation Factors Gene Family AT1G22760 25.258 9.86e-06 46.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0962 50 6083366 6086345 Lele50g0962 50 6083366 6086345 ECH
Lele50g0962 50 6083366 6086345 Lele51g0924 51 5759661 5762598 hybridization
Lele50g0962 50 6083366 6086345 Lele52g0940 52 6113587 6116571 hybridization