Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0957 ATGGGTAGGGTTCCATGTTGTGGGGAGAGTAGTGGAGTGAAGAAAGGACCATGGACACCAGAAGAAGATGAGAAGCTTTTGGAATATATCAGAAAGCATGGCCATGGAAGTTGGAGGACACTTCCAAAGCATGCTGGTCTCAATAGGTGTGGCAAGAGTTGCAGGCTCAGGTGGACTAATTATCTGAGGCCTGATATCAAGAGAGGTAAGTTCTCTGAAGAAGAAGAACGAATCATCATCAACCTTCATTCTGCTCTCGGAAACAAGTGGTCAAAGATTGCAGGCCATCTTCCTGGAAGAACAGATAATGAAATAAAGAACTATTGGAACACTCATATAAGGAAGAAGATGCTTCAGATGGGAATTGACCCAGAAACTCACAAACCCAGAACTGACTTCAATCAACTAATCAATCTCTCTCACTTGATTGGAATCGTCTCATCAACCGATATGGTTCCATGGGTCAACAACAATAGTAATCATCTGGCTTCACAACTTGATCTCACTACTCAGCTAACCAAAATCCAACTTCTGCAAAACCTGTTACAGATTGCTAATTCAAACCCTAGCCTCTCATGCAATAATAATAATCATACCCTCAACGTCCCACTTCAACTGCAATCTCTAATGAATGGGACTATTGGAGTTCAAGAACATGCAAACCCAGATGGTTTATTATTTCCTCAAGCACACGGTGAGAATCACGATGGTACTTCAAAGTCGTGGGCTGATGTACAAGGAGGATTATCATCTGGTTTTAGTAATGGTAGCAACATTTGGAATATTATTCCACATCAGAGCCAGTCGGAGACGACAATACCTGCTCTAGTCTCGGCGTCTCCGGTGACCGACTCAGTCGCCAAGCAAACGGGTGTTAGCTGCAATACAGCTCAAGAGTCCACTGATCATCTGTCACCTAATTCCTCTACAATGTTTGAGAGTTGGGAGAAGCTCCTGGATGATGAAATAACTGGTTCTGACTGGAAGCAGATTCTTGAGTATGTTCTCTCTTCTAATTAA 1020 0.4284 MGRVPCCGESSGVKKGPWTPEEDEKLLEYIRKHGHGSWRTLPKHAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEERIIINLHSALGNKWSKIAGHLPGRTDNEIKNYWNTHIRKKMLQMGIDPETHKPRTDFNQLINLSHLIGIVSSTDMVPWVNNNSNHLASQLDLTTQLTKIQLLQNLLQIANSNPSLSCNNNNHTLNVPLQLQSLMNGTIGVQEHANPDGLLFPQAHGENHDGTSKSWADVQGGLSSGFSNGSNIWNIIPHQSQSETTIPALVSASPVTDSVAKQTGVSCNTAQESTDHLSPNSSTMFESWEKLLDDEITGSDWKQILEYVLSSN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0957 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 260 - -
Lele50g0957 339 SMART sant 67 115 IPR001005 -
Lele50g0957 339 SMART sant 14 64 IPR001005 -
Lele50g0957 339 FunFam Transcription factor MYB39 70 131 - -
Lele50g0957 339 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lele50g0957 339 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Lele50g0957 339 Gene3D - 70 117 - -
Lele50g0957 339 Gene3D - 14 67 - -
Lele50g0957 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele50g0957 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Lele50g0957 339 CDD SANT 17 62 IPR001005 -
Lele50g0957 339 CDD SANT 70 113 IPR001005 -
Lele50g0957 339 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele50g0957 339 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Lele50g0957 339 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lele50g0957 339 FunFam MYB-related transcription factor 14 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0957 Lele-ChrLele50 6044303 6045865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0957 1 337 MYB Transcription Factor Family AT3G02940 47.661 3.50e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele50g0957 Myb_DNA-binding 4.2e-18 CL0123