Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0952 ATGGGTCTCCCTATAGACTTCTCTGTTCTCGATCTCAAATCCCGATTTGAGATCTACGGTGCCATCTCCGGCATACGCATCGACCGTGACAAAGGTGGGTACATTACCTATCAGACCAAGGAATCTGCCGATGCCGCTATAGCTACTGCACTGGACCCATCTTTCGTCATCATTGTCAGTCCGAAAAGGATTCCTCTGGCCATGTGGAGGGAAGAAGTAGGGAACAGTAACAAGGAGAAAAGTTTTCTTTTATTCTCTCTTTTTGAAGGAGGCACGAGATTTGGCATCTATATTGAACTTCTTCCCTTGAGTTGCCCTGATGAAGAGTTCAACGTATTTCAATTCTATGCAGATTTGATTGGGCTAGAAGGAGATAATCTCGACAGGTTTATGCCATATGTAGCAAACCAAACTGAGTGCATATGCTATTGGGTGTCAATGTCAGCTGAAGCTCCCTGCGAGAAGCACAAACCTCGCGGTTCTCAGCCGAACCGGAGGAATCAAGTTGGAAACAAGTTCCGCTTCGTACCGAAATCTGAACTGGATTCTTCTAATTCTAAGGTTGATCGTTCGTTTAAAGAATTAAGCATTCGCGAGGAGGTTGAGGTCGCGCAAGAATTGGACCAGGGGAACAAGCACGGATCGGAGATGAAGAATGAAGTAGGAAATAAGAGAGAAGAGAATCATGTGGATGATTCAAACAAGGAAGGAAATAGTATTTATAGTAGACTGGATAAGCTAATGAGGGATGTAGGGGATCCGGAATTGTCAGAGGAACAGCTGAGTATAAATGATCAATTGCAAGCAGATGAGTTACTTGCTTTGGAGTCAATTTATGGAGAAAATGTATTCAGCCTAGAGAGATGGAAAGGTCTCCGTTGTTTTCAGATACACGTACACCTTGAAGTTTTAGATGAAATTGGCATCACAGCTAAGCTGAATTCTTCCAACAAACATAACACTGCAAGCAGCAATGCAGATGACTTCTCATACTCTTTTAAAGTCCAATATCTTCCACCTATTATTATGACATGTTTATTGCCAAAGTCATACCCAAGCCATCAACCGCCGCATTTTCTAATTTCCGTGAAGTGGTTGGAATCCACAAGAATTTCTAGTCTATGCTCCATGTTAGATTCAATATGGACTGAGCAGCAAGGGCAGGAAGTTATATACCAGTGGGTAGACTGGTTACATGGTTTTTCTCTGTCTCATCTGGGATTTGATAAAGAGATTACTCTTGGTTCTTATGGCATGAAACATGTTGGAGATGAGCGTGCAGTCTCAGGAGCGGTGTCCCTAGATTTTGATATTCCTTCATTACGAAGTTACAACAATGAGAAACATCATGAAAACTTCCTTAAAGAAATGCATGAATGTTGCATTTGCTTCAATGTATATGCAGGTAAGGAGATTGCTCAGTTACCATGTCAGCATTTTTTTTGCTTAAAATGCTTGCAGACCTTTGCTCAGATGCATGTAAAAGAAAGCACCATTAGTAATCTTCAATGTCCCAATTCAAAATGTGCTGTTATGATTCCACCTACTCTGTTAAAACGCTTGCTCGATGATAAAGAGTATGAACGCTGGGAATCCTTGATGTTGGAGAAAACACTTGCATCAATGTCTGATGTTGCTTATTGCCCAAGATGTGAAACACCTTGTATAGAAGATGAAGAACAGCATGCTCAATGCCCTAAATGCTTCTTTAGCTTTTGTACCCTGTGCAGGGAGCGACGCCATGTTGGCGTAGCATGCATGACCCTAGACATGAAGCTTCAAATTTTGCAAGAGCGTCAGAATTCGTCTCAATTAAAGGAAGCTCAGAAGCTGAGGGAACGTGAAAAGATTAATGAAATGCTCAGCATCAAAGAAATTAATCGTGATTCTAAGCTGTGCCCTTCTTGTCAAATGGCTATTTCCCGAACTGGAGGTTGCAATAAAATGGTGTGCGGTAATTGTGGCCAATATTTCTGTTACCGCTGCAACAAAGAGCTTGATGAATCTGATCCTTACGGACATTTCAGGGATGGATCCTGTGAATTGTTCCCACAAGAAATGGTAGAGGCTTGGCAAGAACGCATAAACCACCGTCAGGTGGTAGGGCAGATACAAGCTGAAGTCTTTTTTCACCGTGGCCAGCGATGTCCCAATTGTCGTCAATTTAATGCAAAGGTTGGAAACAATAACCACATGTTTTGCTGGGCATGCCAGAGCCATTATTGCTACTCTTGCAAGGAGATTGTTAGGCGTAGCACGCAGCACTATGGACCCAAGGGTTGCAAACAGCACTCCGATGATTAG 2304 0.4249 MGLPIDFSVLDLKSRFEIYGAISGIRIDRDKGGYITYQTKESADAAIATALDPSFVIIVSPKRIPLAMWREEVGNSNKEKSFLLFSLFEGGTRFGIYIELLPLSCPDEEFNVFQFYADLIGLEGDNLDRFMPYVANQTECICYWVSMSAEAPCEKHKPRGSQPNRRNQVGNKFRFVPKSELDSSNSKVDRSFKELSIREEVEVAQELDQGNKHGSEMKNEVGNKREENHVDDSNKEGNSIYSRLDKLMRDVGDPELSEEQLSINDQLQADELLALESIYGENVFSLERWKGLRCFQIHVHLEVLDEIGITAKLNSSNKHNTASSNADDFSYSFKVQYLPPIIMTCLLPKSYPSHQPPHFLISVKWLESTRISSLCSMLDSIWTEQQGQEVIYQWVDWLHGFSLSHLGFDKEITLGSYGMKHVGDERAVSGAVSLDFDIPSLRSYNNEKHHENFLKEMHECCICFNVYAGKEIAQLPCQHFFCLKCLQTFAQMHVKESTISNLQCPNSKCAVMIPPTLLKRLLDDKEYERWESLMLEKTLASMSDVAYCPRCETPCIEDEEQHAQCPKCFFSFCTLCRERRHVGVACMTLDMKLQILQERQNSSQLKEAQKLREREKINEMLSIKEINRDSKLCPSCQMAISRTGGCNKMVCGNCGQYFCYRCNKELDESDPYGHFRDGSCELFPQEMVEAWQERINHRQVVGQIQAEVFFHRGQRCPNCRQFNAKVGNNNHMFCWACQSHYCYSCKEIVRRSTQHYGPKGCKQHSDD 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0952 767 SUPERFAMILY RING/U-box 455 539 - -
Lele50g0952 767 SMART ring_2 633 662 IPR001841 -
Lele50g0952 767 SMART ring_2 716 745 IPR001841 -
Lele50g0952 767 SMART ring_2 460 507 IPR001841 -
Lele50g0952 767 SMART ibrneu5 528 586 IPR002867 -
Lele50g0952 767 SMART ibrneu5 615 680 IPR002867 -
Lele50g0952 767 ProSitePatterns Zinc finger RING-type signature. 477 486 IPR017907 -
Lele50g0952 767 SUPERFAMILY RING/U-box 619 675 - -
Lele50g0952 767 Gene3D - 600 711 - -
Lele50g0952 767 SUPERFAMILY UBC-like 264 401 IPR016135 -
Lele50g0952 767 ProSiteProfiles TRIAD supradomain profile. 456 685 IPR044066 -
Lele50g0952 767 SUPERFAMILY RNA-binding domain, RBD 2 49 IPR035979 GO:0003676
Lele50g0952 767 CDD RRM_SF 2 48 - -
Lele50g0952 767 ProSiteProfiles Zinc finger RING-type profile. 460 508 IPR001841 -
Lele50g0952 767 Gene3D Ubiquitin Conjugating Enzyme 257 407 IPR016135 -
Lele50g0952 767 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 310 675 IPR031127 GO:0004842|GO:0016567
Lele50g0952 767 SMART RWD2001b 270 405 IPR006575 GO:0005515
Lele50g0952 767 FunFam RBR-type E3 ubiquitin transferase 601 710 - -
Lele50g0952 767 ProSiteProfiles RWD domain profile. 270 405 IPR006575 GO:0005515
Lele50g0952 767 Pfam RWD domain 266 399 IPR006575 GO:0005515
Lele50g0952 767 Gene3D - 1 54 IPR012677 -
Lele50g0952 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 71 IPR000504 GO:0003723
Lele50g0952 767 FunFam RBR-type E3 ubiquitin transferase 455 539 - -
Lele50g0952 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 543 IPR013083 -
Lele50g0952 767 SUPERFAMILY RING/U-box 709 764 - -
Lele50g0952 767 Pfam IBR domain, a half RING-finger domain 528 586 IPR002867 -
Lele50g0952 767 Pfam IBR domain, a half RING-finger domain 622 667 IPR002867 -
Lele50g0952 767 SUPERFAMILY RING/U-box 528 591 - -
Lele50g0952 767 MobiDBLite consensus disorder prediction 205 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0952 Lele-ChrLele50 6016739 6022418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0952 1 81 Homeobox Transcription Factor Family AT1G27050 49.438 2.60e-18 82.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0952 50 6016739 6022418 Lele50g0952 50 6016739 6022418 ECH
Lele50g0952 50 6016739 6022418 Lele52g0930 52 6058551 6060919 hybridization