Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0950 ATGTCGATAGGATGTGGAGTTGAGACGGCTTTGCTCCACAGCAAAGCGCTCTCCTACAGACAACGGTTATTTAGATTGTACCATACTGCTTCTTCGGCAGTGATGTTGGAAGACCACGTGTTTGATGAAAGTCCTAGAGTAGATTATTCCAATGTAATGGTCAATTTTGGAAGAAATAGTACGAGAGTTTCTAGTCTTCAAAGAAAGGGCGGTTTATTTCCTATAGTGGTCTGGGTGATTAAAACCTCAAACTGGGAGACTGAACTTGCAAGAGATAAAATGTTCTGGAAAGCTGTGAGGTGGTACGGATTTTCTCATTCAATTACTTGCTTTAAAATTATTATTCACATATATGCATCGGAAGGAATGCGTATGGAAGCATTTGCTTTGCTCAAAGATATTGTTGGATTCTATAGGAAAGCCAAGTTCGACACATTCAAATTGTTTTCTACTTTGTTAGATTCACCTCAGCATGCGGCATGGTCAATTGTTGTGTATGACATATTAATAAAAGTACTTGCATCCTATTCCATGCTTGATGACGCATTTGATGTGTTCATGAGAATTAAGCATCTGGGGTTTGAACCTGATATATTGTCGTGCAATTTCTTGTTGAAATGCTTGGTAGAAAAAAACAGGGTGGAGTTGGTTGGAAAATTATTTGAAGAGCTAAAAATCTCAGGCCCATCACCCAATATCTACACCTATACAATTATGATGAAATTCTACTGCGGAGGAGATTGTGGGCGGGACGTAGATATTGACCAAGCTACTGAGATTTTTGAAGCAATATTGAGGAATGGGGAACAACCAACTGTTGTCACATGTAGTATTTATATTCGTGGACTTTGTAAACGTGGTTCCGTTGCTGCTGCTCTGCAATTCATTTGTGATTGCAGGTATAGAAACCAGCCTCTGAATAGCTACTGTTTTAATCCAGTAATTTATGAATTTTGTCAAAAAGGTGAAATTGATGAAGCTTTGCAAGTCTGGCAAGAAATGCGGAGCTCAGGAGTATTGCCTGATGTTTGTAGCTACAGTATTTTAATCCATGCATTTTGTAAACAGGGGGATATAAAGAAAGGTTTTGACATGATTGATGAAATGAAACTTTATAATCTAAAACCATCGATAATTAGTTACACCTCCCTTATCTATGGTCTATGCAAGAGTAAGCGGATGGAGCCTTCATTGTATTTGTTCCGGAGTATCGGTGCTTCTGGATACAAATATGATCAAGCTGCTTATGAAACTTTGATCAATGGATTTTGTCGTCAAGGTGATATGGATTCAGCCAAAAAGCTTTTGGAGGAGATGATTACAAATGATCTGGCTCCTACTTCTTTTGGTTTCCAGAGCATAGTTGGAGGATTCTACAAACTGGGAGACTTAGACATGGCACTGGAAGTTCTGAATTCCATGCTACAAGGTGGTCTCTTACCAAATACCATCACTTGCAATTTTATTATCGATGGACTCTGCAGAGAAGGCTGTTTCATGGAAGCCTTGACACTGCTGGAAGAGTTCCAAGACCAAGGAATTGACCTTTCATATAACGCTGTCATCCACAGGCTTTGCAAGGGAGGGCATTTAGAAAGGGCATGGGAGCTCCTTCCAAGAATGATGAAAAGGAATGTACTTCCTGGAGTTGTTAATTATACAATTCTCATTGACGCTTTTGCCAAACAATCTAATCTAAAGAAGGCCTTATGGTTATACACAAAAATGCTGAAAGTTGGAGTCACTCCCAACACCATCACTTATACAGTCCTTATTAACATCTTTTGCCGTGTGGGCAAAATGCGTGAAGCATTTGGTTTTTACAAGGAAATGATAAAAGGTGGTTTGAATCCAGATCAGATTTCATATACATCTTTAATATCTGGTTTTTGTAGTGCGGGAGATATGAGAAGTGCCTGGGTAGTATTCGAAGAAATGAGGAAAGCCTTTTCACCTGATATATTTACCTATACATGTTTGATAGATGGATTTTGCAAGTTAAACCGCATAGATAACGCCTCTTTTCTGTTTGATGAAATGAACAGAAATGCAGTTACTCCTAATGTTGTCACTTACACTGTTCTCATTTCTTGGTACCGTAACCATGGATATGCAGATGAGGCACATAGGTTATATCGTGAAATGATTGTAAAGGGTATTTCACCAGATGATATAACTCATATGGTCCTTTTGAAAGGCAGCAGAGCAGAAGCCAAGGTTCCATGA 2226 0.389 MSIGCGVETALLHSKALSYRQRLFRLYHTASSAVMLEDHVFDESPRVDYSNVMVNFGRNSTRVSSLQRKGGLFPIVVWVIKTSNWETELARDKMFWKAVRWYGFSHSITCFKIIIHIYASEGMRMEAFALLKDIVGFYRKAKFDTFKLFSTLLDSPQHAAWSIVVYDILIKVLASYSMLDDAFDVFMRIKHLGFEPDILSCNFLLKCLVEKNRVELVGKLFEELKISGPSPNIYTYTIMMKFYCGGDCGRDVDIDQATEIFEAILRNGEQPTVVTCSIYIRGLCKRGSVAAALQFICDCRYRNQPLNSYCFNPVIYEFCQKGEIDEALQVWQEMRSSGVLPDVCSYSILIHAFCKQGDIKKGFDMIDEMKLYNLKPSIISYTSLIYGLCKSKRMEPSLYLFRSIGASGYKYDQAAYETLINGFCRQGDMDSAKKLLEEMITNDLAPTSFGFQSIVGGFYKLGDLDMALEVLNSMLQGGLLPNTITCNFIIDGLCREGCFMEALTLLEEFQDQGIDLSYNAVIHRLCKGGHLERAWELLPRMMKRNVLPGVVNYTILIDAFAKQSNLKKALWLYTKMLKVGVTPNTITYTVLINIFCRVGKMREAFGFYKEMIKGGLNPDQISYTSLISGFCSAGDMRSAWVVFEEMRKAFSPDIFTYTCLIDGFCKLNRIDNASFLFDEMNRNAVTPNVVTYTVLISWYRNHGYADEAHRLYREMIVKGISPDDITHMVLLKGSRAEAKVP 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Lele50g0950 741 SUPERFAMILY TPR-like 347 680 IPR011990 GO:0005515
Lele50g0950 741 Gene3D Tetratricopeptide repeat domain 249 370 IPR011990 GO:0005515
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 618 IPR002885 -
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Lele50g0950 741 TIGRFAM PPR: pentatricopeptide repeat domain 655 688 IPR002885 -
Lele50g0950 741 TIGRFAM PPR: pentatricopeptide repeat domain 379 412 IPR002885 -
Lele50g0950 741 TIGRFAM PPR: pentatricopeptide repeat domain 690 723 IPR002885 -
Lele50g0950 741 TIGRFAM PPR: pentatricopeptide repeat domain 415 447 IPR002885 -
Lele50g0950 741 TIGRFAM PPR: pentatricopeptide repeat domain 517 549 IPR002885 -
Lele50g0950 741 TIGRFAM PPR: pentatricopeptide repeat domain 345 377 IPR002885 -
Lele50g0950 741 TIGRFAM PPR: pentatricopeptide repeat domain 309 343 IPR002885 -
Lele50g0950 741 TIGRFAM PPR: pentatricopeptide repeat domain 164 198 IPR002885 -
Lele50g0950 741 TIGRFAM PPR: pentatricopeptide repeat domain 553 585 IPR002885 -
Lele50g0950 741 TIGRFAM PPR: pentatricopeptide repeat domain 452 483 IPR002885 -
Lele50g0950 741 TIGRFAM PPR: pentatricopeptide repeat domain 586 619 IPR002885 -
Lele50g0950 741 TIGRFAM PPR: pentatricopeptide repeat domain 621 648 IPR002885 -
Lele50g0950 741 TIGRFAM PPR: pentatricopeptide repeat domain 484 514 IPR002885 -
Lele50g0950 741 Gene3D Tetratricopeptide repeat domain 515 635 IPR011990 GO:0005515
Lele50g0950 741 Gene3D Tetratricopeptide repeat domain 636 740 IPR011990 GO:0005515
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Lele50g0950 741 Pfam PPR repeat family 196 244 IPR002885 -
Lele50g0950 741 Pfam PPR repeat family 583 632 IPR002885 -
Lele50g0950 741 Pfam PPR repeat family 341 390 IPR002885 -
Lele50g0950 741 Pfam PPR repeat family 517 562 IPR002885 -
Lele50g0950 741 Pfam PPR repeat family 446 495 IPR002885 -
Lele50g0950 741 Pfam PPR repeat family 652 697 IPR002885 -
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 653 687 IPR002885 -
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 619 649 IPR002885 -
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Lele50g0950 741 Gene3D Tetratricopeptide repeat domain 86 248 IPR011990 GO:0005515
Lele50g0950 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 78 393 - -
Lele50g0950 741 Pfam PPR repeat 408 439 IPR002885 -
Lele50g0950 741 Pfam PPR repeat 306 335 IPR002885 -
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 271 IPR002885 -
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 688 722 IPR002885 -
Lele50g0950 741 Pfam PPR repeat 164 194 IPR002885 -
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 549 583 IPR002885 -
Lele50g0950 741 Gene3D Tetratricopeptide repeat domain 371 441 IPR011990 GO:0005515
Lele50g0950 741 Gene3D Tetratricopeptide repeat domain 442 514 IPR011990 GO:0005515
Lele50g0950 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 512 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0950 Lele-ChrLele50 6005865 6008090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0950 256 733 Glycosyltransferase AT1G05670 30.185 5.46e-70 242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0950 50 6005865 6008090 Lele50g0950 50 6005865 6008090 ECH
Lele50g0950 50 6005865 6008090 Lele51g0918 51 5706744 5714412 hybridization
Lele50g0950 50 6005865 6008090 Lele52g0928 52 6045618 6054291 hybridization