Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0949 ATGGCGGCTCCGGCACCGGCGCCCATTTCTAATGCGAACGCTCCACCGCCGTTCCTTAGTAAGACGTATGACATGGTGGATGACCCGGCCTCTGATGCGATCGTGTCTTGGAGCCCAACCAACAACAGCTTCGTGGTTTGGAACCCACCAGAGTTTGCCAGAGATCTCTTGCCCAAGTACTTCAAGCACAATAATTTCTCCAGCTTTGTGAGGCAGCTGAACACTTATGGTTTTCGGAAGGTGGATCCAGATCGATGGGAATTTGCAAATGAGGGCTTTTTAAGGGGTCAGAAGCACTTGCTTAAGAGTATTACTCGACGAAAACCTGCCCATGGCCATAATAATCAACAAACACAGCACTCACATGGACAGAATTCATCAGTAGCTGCATGTGTAGAAGTTGGGAAGTTTGGACTTGAAGAAGAGGTTGAGAGGCTTAAAAGGGACAAGAATGTGCTCATGCAGGAGCTTGTGAGGTTGAGGCAGCAGCAACAGACCACTGATAACCAGCTGCAGACAATGGTTCAACGGCTTCAGGGAATGGAACAACGACAACAGCAAATGATGTCATTCCTTGCCAAGGCTGTCCAGAGCCCTGGCTTCTTTGCTCAATTTGTACAACAGCAGAATGAGAGCAATAGACGCATAACTGAAGCCAACAAAAAACGGCGGCTTAAGCAGGAAGGTATTGCTGAAACAGAATGTACTCCTGCTTCTGATGGACAAATTGTTAAGTATCAACCTCTGATGAATGAAGCGGCAAAGGCAATGCTAAGGAAGATAATGAAATTGGATACTTCACGGCCGGAATCTTTTAATAACAACCTTGATAACGACATCATTGGGAATGGTTCATCATCATCCAATGCAATGGACAGTTGTAGCTCTTCAAGCTGGACTTCTGGAGTTACACTCCAAGAGGTCCCGCCAACTTCAATTCAATCTTCTCACATTCCAGCTGCGTCAGGAACTTCGGGGTCCTCAGCTGACAAATCCCAAATCCCATCTACAAAAACTGCACCTGCTGTCTCTGCTTCTCAGGGAGATGTCATGATACCTGATCTTTCGTCCATACCAGAGATGGTAACAGAAAGTATTCCTGATGGTCCTGGAGAAAATTATGTGAGACCTGCAATGGATACCACGGATCCTTCTTCATTGGGAGTGAATGGGTCATTGCCCAGTGATATTGGTGGTGTTTCTACTGATGCAGACTGCATTGATGAGTTGTTACGCAATCCTTCCTTTTGGGATGATTTTCTTCTGCAAAGTCCATTGCGTGAGGATATCGAGATTAATGCAGCCGAAACAGCGTCCGATGAGGTGCAGCCAATGGAAGACGGGTGGGACAAAATTGAACACATGAGCCAACTTACAGAGCAGATGGGTCTTCTTTCTTCAGATCCAAGAGCAGGTTGA 1419 0.4658 MAAPAPAPISNANAPPPFLSKTYDMVDDPASDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGHNNQQTQHSHGQNSSVAACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRITEANKKRRLKQEGIAETECTPASDGQIVKYQPLMNEAAKAMLRKIMKLDTSRPESFNNNLDNDIIGNGSSSSNAMDSCSSSSWTSGVTLQEVPPTSIQSSHIPAASGTSGSSADKSQIPSTKTAPAVSASQGDVMIPDLSSIPEMVTESIPDGPGENYVRPAMDTTDPSSLGVNGSLPSDIGGVSTDADCIDELLRNPSFWDDFLLQSPLREDIEINAAETASDEVQPMEDGWDKIEHMSQLTEQMGLLSSDPRAG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0949 472 Pfam HSF-type DNA-binding 18 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g0949 472 MobiDBLite consensus disorder prediction 268 350 - -
Lele50g0949 472 FunFam Heat shock transcription factor 1 11 108 - -
Lele50g0949 472 MobiDBLite consensus disorder prediction 110 127 - -
Lele50g0949 472 Gene3D - 10 108 IPR036388 -
Lele50g0949 472 SMART hsfneu3 14 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g0949 472 MobiDBLite consensus disorder prediction 108 127 - -
Lele50g0949 472 Coils Coil 136 163 - -
Lele50g0949 472 MobiDBLite consensus disorder prediction 268 344 - -
Lele50g0949 472 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g0949 472 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g0949 472 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g0949 472 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele50g0949 472 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 296 IPR027725 -
Lele50g0949 472 SUPERFAMILY "Winged helix" DNA-binding domain 13 107 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0949 Lele-ChrLele50 5998240 6002114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0949 4 466 HSF AT1G32330 56.000 3.74e-169 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele50g0949 HSF_DNA-bind 3e-33 CL0123