Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0947 ATGAGCTTTCAGGATATCGAAGCCGGCCGGCCTTTCGCTCCGAGGCGAAACCTAATCAATGGCAAGCAAGACCCTACACAGGCGGTGTCGTCCGGTGTATTTCAGATCAACACAGCTGTGTCCACATTTCAGAGACTCGTCAACACCCTTGGAACCCCGAAAGACACGCCCGAGCTCCGCGAGAAGCTGCACAAGACTAGACTGCATATTGGGCAATTGGTGAAGGATACATCAGCTAAACTCAAGCAAGCTAGTGAAATAGATCACCATGGTGAAGTTAATGCAAGCAAGAAGATAGCAGATGCCAAACTTGCAAAAGACTTTCAGGCAGTGTTGAAAGAGTTTCAAAAGGCTCAACGGCTTGCAGCTGAGAGGGAAACAACTTACACTCCTTTCGTTCCACAAGCAGTTCTTCCCTCAAGCTATACAGCTACTGAGGTAGATGCCTCTGGTAAGAGCCAAGAACAGCGGGCTCTCCTTGTTGAATCCAGAAGGCAGGAGGTCTTGATGTTGGATAATGAGATTGTGTTTAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAGGAAATCCAGGAGCAAATTGGCGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAACCATGATTGATGATATTGGCACCAACATTGAGAACTCTCATGCAGCAACTGCGCAAGCAAAATCCCAATTAGTGAAAGCGGCAAAGACCCAAAGATCAAATTCATCTCTGACTTGCTTACTCTTGGTGATCTTCGGAATTGTGCTTCTCATTGTGATCATAGTCCTTGCGGCCTAG 819 0.464 MSFQDIEAGRPFAPRRNLINGKQDPTQAVSSGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHGEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETTYTPFVPQAVLPSSYTATEVDASGKSQEQRALLVESRRQEVLMLDNEIVFNEAIIEEREQGIQEIQEQIGEVNEIFKDLAVLVHEQGTMIDDIGTNIENSHAATAQAKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0947 272 Gene3D - 173 272 - -
Lele50g0947 272 FunFam Syntaxin-22 like 172 272 - -
Lele50g0947 272 SMART SynN_4 15 127 IPR006011 GO:0016020
Lele50g0947 272 SMART tSNARE_6 174 241 IPR000727 -
Lele50g0947 272 Pfam Syntaxin-like protein 29 129 IPR006011 GO:0016020
Lele50g0947 272 ProSitePatterns Syntaxin / epimorphin family signature. 185 224 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele50g0947 272 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 179 241 IPR000727 -
Lele50g0947 272 CDD SynN 23 155 IPR006011 GO:0016020
Lele50g0947 272 PANTHER SYNTAXIN 26 264 IPR045242 -
Lele50g0947 272 SUPERFAMILY t-snare proteins 22 234 IPR010989 GO:0016020|GO:0016192
Lele50g0947 272 Gene3D - 20 133 - -
Lele50g0947 272 FunFam Syntaxin-22 like 20 133 - -
Lele50g0947 272 Pfam SNARE domain 215 267 IPR000727 -
Lele50g0947 272 CDD SNARE_Qa 182 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0947 Lele-ChrLele50 5994370 5997266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0947 1 260 SNARE and Associated Proteins AT5G46860 79.615 2.09e-149 417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0947 50 5994370 5997266 Lele50g0947 50 5994370 5997266 ECH
Lele50g0947 50 5994370 5997266 Lele51g0916 51 5697318 5700115 hybridization
Lele50g0947 50 5994370 5997266 Lele52g0927 52 6041725 6044633 hybridization