Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0942 ATGTATGGGGATTGTCAAGTGATGTCAAACATGGGAAGTAACGTAGTAGTAAACTCAGAAACGCTCTTCTCTTCCACAATCCAAAACTCGAACTTCAACTTCATACCCACCATGCCTTTTCAACCTTTCCAAACCCCCTTGAAAGAAGAAGAAGGGATGATGTTGAGAGGGAAGGAAGAGATCATGGAGAGTGGTTCTGGTAGCGAACAAGCCGAACAAGACAACAAGTCAGGGAACGAGCAAGACAGTGAACAGCCAGCCAACAAGAAGAAACGTTACCACAGGCACACTGCTCGTCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCTCATCCAGACGACAAACAAAGGATGAAACTCAGCCAAGAGCTGGGCTTGAAGCCCCGCCAAGTCAAGTTCTGGTTTCAAAATCGTCGAACTCAGATGAAGGCTCAACAAGATAGAGCTGATAATGTGATACTGAGAGCAGAAAATGAGAACCTCAAGAATGAGAACTATCGTCTACAAGCAGCTCTGCGTAATGTGATGTGTCCCAATTGTGGTGGTCCGGCGGCCATGATGGGTGCTGATCTCGGCATGGATGACCATCAGCTTCGCCTTGAAAACGTTCGCCTCAGAGAAGAGGTTTCTTATTTTTCTTATCCACTGAACTCTCTATCTACTCAATTTTTCTAA 681 0.4537 MYGDCQVMSNMGSNVVVNSETLFSSTIQNSNFNFIPTMPFQPFQTPLKEEEGMMLRGKEEIMESGSGSEQAEQDNKSGNEQDSEQPANKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENENLKNENYRLQAALRNVMCPNCGGPAAMMGADLGMDDHQLRLENVRLREEVSYFSYPLNSLSTQFF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0942 226 PRINTS Lambda-repressor HTH signature 127 143 IPR000047 GO:0003677
Lele50g0942 226 PRINTS Lambda-repressor HTH signature 118 127 IPR000047 GO:0003677
Lele50g0942 226 SUPERFAMILY Homeodomain-like 75 148 IPR009057 -
Lele50g0942 226 Coils Coil 146 176 - -
Lele50g0942 226 MobiDBLite consensus disorder prediction 61 97 - -
Lele50g0942 226 CDD homeodomain 90 148 IPR001356 GO:0003677
Lele50g0942 226 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Lele50g0942 226 FunFam Homeobox-leucine zipper protein HDG1 77 163 - -
Lele50g0942 226 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Lele50g0942 226 SMART HOX_1 88 151 IPR001356 GO:0003677
Lele50g0942 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 84 214 IPR042160 -
Lele50g0942 226 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Lele50g0942 226 MobiDBLite consensus disorder prediction 75 89 - -
Lele50g0942 226 Gene3D - 74 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0942 Lele-ChrLele50 5962839 5964128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0942 26 211 Homeobox Transcription Factor Family AT5G46880 58.654 3.81e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele50g0942 Homeodomain 5.6e-19 CL0123