Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0939 ATGTGGCGATGTGTAAAGACGGAGGCCTACAAGGAGCGACTTCGTAATGAAATGGTGCAAGTTGGCTCAATTAGTACTATCCATTTCTATGAGGAGGGTTTGATGGAAGGGATACAATTATCTTTGGTGAAAAGAAGACTTGCTTTATCTAAGGAAGCTAGACATGGGCTAGAATATTTGAAGCGCAAAAGGATTCAACGGGCAAAACTCATTACTGCCTCAGAAACCACTGTTGCTAGCACAATGACTAGAAGTGGAGGAGATGCTTTAAGAGCTTCAGCTTCGTGTGGTGGTGTAAGGTTTCATGGCAATGCAGATGTCTTCTCAAAGCGGAAGGTGGATAAGTTTGAGACAAGTGATCTTGAATGGACTGAGAAAATTCCAGAATGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGGGGATCCTCTAGTTTACTTGCAAAAGATAGCTCCAGAAGCTTCAAAATATGGTATATGCAAGATTGTTTCACCTCTGAGTGCGTCTGTTCCTGCTGGAGTTGTTTTAATGAAGGAGAAGGCAGGATTCAAGTTTACAACTAGAGTACAGCCTCTTCGGCTTGCTGAGTGGGACACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGCAATTACACATTCCGTGATTTTGAGAAAATGGCGAATAGAGTTTTTGCACATAGATATTCTAGTGCTGGATGTCTTCCTGCCGCATTTTTGGAAAAAGAGTTTTGGCATGAAATTGCTTGTGGACAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGTAGTGCTTTTTCATCTTCTCCTACTGATCAGCTTGGGAACAGCAAATGGAATTTAAAGTGTAAACAATCTTCTGTTATTTCTGATGAGCTGATTGATCTGACATTTTCATCAACCAAAGTACAACTTTTTGTTTTGTATCAGGAAGTTTCACGGTTGCCCAAGTCCGTTTTGCGCCTCTTGGAAACAGCAATTCCGGGAGTAACAGAACCCATGCTGTACATTGGAATGCTCTTCAGTATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGTATAAATTATCAACACTGTGGGGCATCAAAAACTTGGTATGGCATTCCAGGTCATGCAGCATTGGATTTTGAAAGGGTGGTGAGAGAGCATGTGTACTCTAAAGATATTCTTTCTAGTGATGGGGAGGATGGAGCTTTCGATGTTCTTCTGGGGAAAACAACTCTGTTCCCTCCAAATATTTTGTTGGATAATGAAGTCCCTGTCTATAAGGCTGTTCAAAAGCCAGGGGAGTTTGTAATAACTTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAACTTTGCAATTGGTGATTGGTTTCCTTTAGGAGCTATTGCTAGCCAGCGATATGCGCTTCTTAACAGGATGCCTCTGCTACCTCATGAAGAACTTCTATGCAAAGAAGCAATACTCCTTCATACAAACTTAGAACTTGTAGATTCAGACTTTCCCTCTGCAGATCTGTTGGCTCATAATTGCATAAAGATTTCTTTTGTGAATCTAATGCGCTTTCAGCATTGTGCTCGCTGGCTCCTAATGAAATCAAGGTCTTGTCCGAGTGTTTTTCCACATTCCCACAGCACAATTCTCTGTAGCCTCTGCAGACGCGATTGTTATGTTGCATATGTAGACTGTGAGTGTCACATGCACCCTGTGTGCCTTCGCCATGATATTGAAGCTCTTGGCTTAACCTGTGGGAGCGAACACGCTCTTTATGTGAGGCAGGATATTAGTGATCTGGAAGCTGCATCCAAGAGGTTTGAGCAGGGAGATGGAATCGTGGATGAGATTCTTAAGCAAACCAAGGGTGACAATAACATGTATTCATATCCTTTGTCAAATATGTTTCAGAGAGCTGAAGCAAATGGATATACTCCTTATTGCGAGATAGAATCTGATCCTGTTATTGAACATTATTCAACCCCAGATCAGGCAACAAGTAATACAGAGCGCAATTTACAAAGTCAACTTGTTTTGAGGCACTGCCCAGATCTTAAACAAGAAGTCTGCGAGGCTTCTTTTTCTTCTGCTGCATCCACTCTCTGTTCTCTTTTAGAACCTGTTGATAGGTCTTCTGCTCTCAAAAATGACGATGGGCATGCTTCTTATTTTACTTCTGGCTCTATTGATTCTGAAGAATGTTGCGAAGGAGTATCGAATAGCGCGTGCCAGTCTTTACTATCCTCTGTGCGCTATCATGAAATCTCAAGTAAACCTCAGCGTGATCTCGATGAATTAGATGTGATGCCCATTGTGGATAAAGAGGATAACGATTCTGATTCAGAAATATTTAGGGTAAAGCGGCCATCTTCTCTGAAGGCAGAGAAGAGAAATTTGAATGCCACCGTGTCTTCCAAGCATTCGGACCAACAGGGGCTTAAACGATTGAAGAAAGTTAACGAGGGAAGTAACCCTCCACAAGCAATGGATTGCAGCAGAAGCAATGGTTCAAGTAACAAATTCAATGAGCCGATGAAACGGAAATTTGAGGGTGAAAGATCGGTGATGGACAAATTTGGAGGAGGAAATAGCATTCCCATATCTGTGAGGTATAAGAAGCTGGGCAACGAGGGAGTTAGTAGCGAGCGAGATCAGCACAGGAAATATAGGGAACGACCTCCCTTTGAGATGGGGCCCAAGCGCCTTAAAGTGCGAGGCCCTTCCTTCTTGAGCTTAGAGAGTGCTGGTTTTGCCTCTAAATGGTAA 2778 0.423 MWRCVKTEAYKERLRNEMVQVGSISTIHFYEEGLMEGIQLSLVKRRLALSKEARHGLEYLKRKRIQRAKLITASETTVASTMTRSGGDALRASASCGGVRFHGNADVFSKRKVDKFETSDLEWTEKIPECPVYSPTKEEFGDPLVYLQKIAPEASKYGICKIVSPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGSNYTFRDFEKMANRVFAHRYSSAGCLPAAFLEKEFWHEIACGQMETVEYACDVDGSAFSSSPTDQLGNSKWNLKCKQSSVISDELIDLTFSSTKVQLFVLYQEVSRLPKSVLRLLETAIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALDFERVVREHVYSKDILSSDGEDGAFDVLLGKTTLFPPNILLDNEVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLNRMPLLPHEELLCKEAILLHTNLELVDSDFPSADLLAHNCIKISFVNLMRFQHCARWLLMKSRSCPSVFPHSHSTILCSLCRRDCYVAYVDCECHMHPVCLRHDIEALGLTCGSEHALYVRQDISDLEAASKRFEQGDGIVDEILKQTKGDNNMYSYPLSNMFQRAEANGYTPYCEIESDPVIEHYSTPDQATSNTERNLQSQLVLRHCPDLKQEVCEASFSSAASTLCSLLEPVDRSSALKNDDGHASYFTSGSIDSEECCEGVSNSACQSLLSSVRYHEISSKPQRDLDELDVMPIVDKEDNDSDSEIFRVKRPSSLKAEKRNLNATVSSKHSDQQGLKRLKKVNEGSNPPQAMDCSRSNGSSNKFNEPMKRKFEGERSVMDKFGGGNSIPISVRYKKLGNEGVSSERDQHRKYRERPPFEMGPKRLKVRGPSFLSLESAGFASKW 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0939 925 Pfam jmjN domain 131 163 IPR003349 -
Lele50g0939 925 FunFam Lysine-specific demethylase isoform A 125 502 - -
Lele50g0939 925 MobiDBLite consensus disorder prediction 880 903 - -
Lele50g0939 925 ProSiteProfiles JmjC domain profile. 305 475 IPR003347 -
Lele50g0939 925 SMART cupin_9 305 475 IPR003347 -
Lele50g0939 925 MobiDBLite consensus disorder prediction 829 846 - -
Lele50g0939 925 SUPERFAMILY Clavaminate synthase-like 316 491 - -
Lele50g0939 925 MobiDBLite consensus disorder prediction 880 906 - -
Lele50g0939 925 SMART JmjN_1 129 170 IPR003349 -
Lele50g0939 925 Pfam JmjC domain, hydroxylase 335 458 IPR003347 -
Lele50g0939 925 MobiDBLite consensus disorder prediction 800 848 - -
Lele50g0939 925 Gene3D Cupin 130 505 - -
Lele50g0939 925 Pfam C5HC2 zinc finger 555 606 IPR004198 -
Lele50g0939 925 PANTHER LYSINE-SPECIFIC DEMETHYLASE 122 840 - -
Lele50g0939 925 ProSiteProfiles JmjN domain profile. 130 171 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0939 Lele-ChrLele50 5937608 5943844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0939 123 489 C2H2 Transcription Factor Family AT5G04240 33.933 1.54e-66 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele50g0939 JmjC 2.4e-38 CL0029