LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele50g0931	ATGGGTAGCGGTGACATGGATAAAACTCCAAAAGAGAAGGAGCCAAAGACACCTCCGGCTATGTCACAGTCTTCAACTCATGGAACTGGAACAATTAATCCTGATTGGTCCAGCTTTCAGGCATATTCTCCAATGCCTCCACATGGGTTCTTAGCATCAAGTCACCAAGCTCACCCATATGTGTGGGGTGTCCAGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCGAATGGTATTGTTGAGCCTTCAGGCAATACTCTTGGCAACATGGAAACTGATGTTAAGCCTCCTGAGGTGAAGGAAAAATTGCCGATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATTACGGGAAAGAATGTTGAACATAGTAAAACACCAGGGACATCTGCTAATGGAGTTCATTCAAAGAGCTTGGACACTGAAATGGACATGGGACACAACACTGAGTGTGCAATGACATGGGAAAATCTGAAGTGTCTACATGACTCACAGCTGAAATCAGAGGGAAGGCAGGACTCTTTGGGAGGTCTGACATGTTTATGCTTTGTTTTTCTGACTGAACCATCTCAAAATGGAGGTTCAGTTCATGCTTCTCAAAATGGGGGACTTAACGCACCTCACAATATGGTCAATCAACCTATGAGCATCATGCCTATCTCTTCTGGTGCTCCTGTTGGAGTTTCTGGTCCCACGACAAATTTAAATATAGGAATGGATTATTGGGGTGCACCCACTTCATCCACTATTCCTGCTATGCGTGGAAAGGTTCCTTCTACTGCTGTTGCTGGAGGAATGGTTACTGCTGGATCACGGGAGAGTGTTCAGTCACAACTTTGGCTGCAGGATGAAAGAGAGCAAAAGAGACAAAGACGAAAGCAGTCTAATAGGGAATCAGCTCGCAGGTCTAGGATGCGCAAGCAGGCTGAATGTGATGAACTAGCCCAACGAGCTGAGGTGTTAAAAGAAGAGAATGCTTCTCTCCGCTCTGAAGTGAATCGGATAAGGAGTGAGTACGAGCAGCTGCTCTCAGAAAATGCTGCCCTCAAGGTGATAAAATCTTGA	1077	0.4513	MGSGDMDKTPKEKEPKTPPAMSQSSTHGTGTINPDWSSFQAYSPMPPHGFLASSHQAHPYVWGVQGSYPFSPFAMPSPNGIVEPSGNTLGNMETDVKPPEVKEKLPIKRSKGSLGSLNMITGKNVEHSKTPGTSANGVHSKSLDTEMDMGHNTECAMTWENLKCLHDSQLKSEGRQDSLGGLTCLCFVFLTEPSQNGGSVHASQNGGLNAPHNMVNQPMSIMPISSGAPVGVSGPTTNLNIGMDYWGAPTSSTIPAMRGKVPSTAVAGGMVTAGSRESVQSQLWLQDEREQKRQRRKQSNRESARRSRMRKQAECDELAQRAEVLKEENASLRSEVNRIRSEYEQLLSENAALKVIKS	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele50g0931	358	MobiDBLite	consensus disorder prediction	1	40	-	-
	Lele50g0931	358	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	295	310	IPR004827	GO:0003700\|GO:0006355
	Lele50g0931	358	Pfam	bZIP transcription factor	288	350	IPR004827	GO:0003700\|GO:0006355
	Lele50g0931	358	MobiDBLite	consensus disorder prediction	286	314	-	-
	Lele50g0931	358	Pfam	G-box binding protein MFMR	1	81	IPR012900	-
	Lele50g0931	358	SUPERFAMILY	Leucine zipper domain	292	347	IPR046347	GO:0003700\|GO:0006355
	Lele50g0931	358	MobiDBLite	consensus disorder prediction	18	40	-	-
	Lele50g0931	358	MobiDBLite	consensus disorder prediction	1	15	-	-
	Lele50g0931	358	FunFam	BZIP transcription factor	290	341	-	-
	Lele50g0931	358	SMART	brlzneu	288	352	IPR004827	GO:0003700\|GO:0006355
	Lele50g0931	358	Gene3D	-	290	346	-	-
	Lele50g0931	358	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	290	353	IPR004827	GO:0003700\|GO:0006355
	Lele50g0931	358	Pfam	Disordered region downstream of MFMR	103	255	-	-
	Lele50g0931	358	PANTHER	G-BOX-BINDING FACTOR 3-RELATED	1	354	IPR044827	GO:0003700\|GO:0006355\|GO:0043565
	Lele50g0931	358	Coils	Coil	301	349	-	-
	Lele50g0931	358	CDD	bZIP_plant_GBF1	293	343	IPR045314	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele50g0931	Lele-ChrLele50	5869442	5874391	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele50g0931	1	354	bZIP Transcription Factor Family	AT2G35530	52.658	1.84e-115	339

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele50g0931		MFMR_assoc	9.2e-38	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele50g0931	50	5869442	5874391	Lele50g0931	50	5869442	5874391	ECH
	Lele50g0931	50	5869442	5874391	Lele51g0905	51	5566384	5572379	hybridization
	Lele50g0931	50	5869442	5874391	Lele52g0914	52	5906011	5911302	hybridization