Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0915 ATGGCAGCTTTCACAGTGTACACAACACAATCTCTCAACACAAATTCCTCCTTCACAACCCCACCAAAATCCCACTTGGGTTTTCACCAAAAACAGGTTCTTTTCTGCAGAAGCAGAACCAGCAGCAGAAGTAATATCGGAAGCAGCAGACCATGGGTGATCACATGCGCTGCAGGTGACTCACAGACAGTGGTGATTGGTCTAGCAGCAGACTCAGGATGTGGGAAGAGTACCTTCATGAGGAGGCTTACCAGTGTGTTTGGAGGAAAAGCAGAACCACCAAAAGGAGGGAATCCAGATTCCAACACACTAATAAGTGACACAACCACAGTAATATGTTTGGATGATTATCATTCTCTTGACAGAACAGGAAGGAAGGAAAAGGGAGTCACAGCACTTGACCCAAGAGCCAACGATTTTGATCTCATGTATGAACAAGTTAAGGCCATCAAAGAAGGAATTGCTGTTGAGAAACCCATTTACAACCATGTCACTGGTCTCTTGGACCCACCTGAGCTCATCAAGCCACCCAAGATCTTGGTCATCGAAGGCTTGCACCCAATGTTTGATCCTCGGGTCAGAGAACTATTGGACTTCAGCATTTACTTGGACATCAGCAATGAGGTGAAATTCGCCTGGAAAATTCAGAGAGACATGGCAGAACGTGGCCACAGCCTCGAAAGCATCAAAGCTAGCATCGAAGCAAGAAAACCCGATTTCGACGCTTATATTGATCCTCAGAAGCAATATGCAGATGCAGTGATAGAAGTGTTACCAACGCAGTTAATACCAGACGATAATGAAGGGAAGATATTGAGAGTGAAATTGATACAGAAAGAAGGGGTTAAGAATTTCAGCCCAGTTTACTTGTTTGATGAAGGCTCTACCATTTCCTGGATTCCTTGTGGAAGGAAGCTCACTTGCTCTTACCCTGGCATCAAATTCTTCTATGGTCCTGAAACTTACTATGGTCACGAGGTATCAGTTGTAGAGATGGATGGGCAATTTGACAGACTAGATGAGTTAATATACGTTGAGAGCCATCTAAGCAACTTGTCAACCAAGTTCTATGGAGAAGTTACACAACAAATGTTGAAGCACTCCGAGTTCCCCGGCAGCAACAACGGCACTGGTCTCTTCCAAACCATAATTGGCTTGAAGATCAGAGATCTCTTTGAGCAGATCGTAGCAAGCAGGTCTCAGACACCAGTAAAAGCAGCTAAAGCTTAA 1230 0.4455 MAAFTVYTTQSLNTNSSFTTPPKSHLGFHQKQVLFCRSRTSSRSNIGSSRPWVITCAAGDSQTVVIGLAADSGCGKSTFMRRLTSVFGGKAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKEGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDPRVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVKLIQKEGVKNFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPETYYGHEVSVVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHSEFPGSNNGTGLFQTIIGLKIRDLFEQIVASRSQTPVKAAKA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0915 409 PANTHER URIDINE KINASE 55 298 - -
Lele50g0915 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 334 IPR027417 -
Lele50g0915 409 Pfam Phosphoribulokinase / Uridine kinase family 65 263 IPR006083 GO:0005524|GO:0016301
Lele50g0915 409 FunFam Phosphoribulokinase 60 290 - -
Lele50g0915 409 ProSitePatterns Phosphoribulokinase signature. 214 227 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele50g0915 409 Gene3D - 60 292 IPR027417 -
Lele50g0915 409 PRINTS Phosphoribulokinase family signature 179 197 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele50g0915 409 PRINTS Phosphoribulokinase family signature 214 231 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele50g0915 409 PRINTS Phosphoribulokinase family signature 70 87 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele50g0915 409 PRINTS Phosphoribulokinase family signature 232 255 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele50g0915 409 CDD PRK 65 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0915 Lele-ChrLele50 5761979 5764729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0915 117 291 PRT Gene Family AT3G27440 26.966 1.49e-16 79.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0915 50 5761979 5764729 Lele51g0894 51 5491505 5494660 hybridization
Lele50g0915 50 5761979 5764729 Lele52g0894 52 5796177 5800696 hybridization