Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0890 ATGAGTATTGTTCGACACCCGTTTCTTTTAAATTTTAAGGCAAGAAGAGGATTCTTCAGGTGTTTCTATAAGGTGGACTTTTCATCTGAATCAAGATTTCTTTTGGATTTGATTGCTAAGCTTAAAGCTGAGAAGGTTGAAGGTATGAATCCTAACTCTCTAATCAGTAATTCGGGACCGCAGAATGTTGGAACTGGCCTGGCTGGGCCACCGGCTTTTAATCCCATAAAGAGTGACAGTGGTATGAGTACAGAAGTGGGTCAGTATGAACACCAACATAGGTGTTCTTTTGCTTCAGCTGGGTCTTCTAGTTCATTTACGCCTTGCAGCAATTGTGGAGGCTCTGACCATAGCTCTATGCATTGCCCAAACATTACAAGTGTACCTCGACAGTCCATGGGAGGAGTGGCCTATGCAAATAGGGCATCTTCAGGGGTAGGTGGTGGTGTTGCCACTGGTGAATGCTTTAAATGTCATCAAACTGGTCACTGGGCAAGAGACTGTCCTGGTCTCAGTGCAGCAGCCCCTTCAGCTTATGGAAGTAGCTTTGTTCATGGAGGACATGAGTTTGTTCAAAGGCAACAGCTTGGAGGATTTTGA 600 0.4483 MSIVRHPFLLNFKARRGFFRCFYKVDFSSESRFLLDLIAKLKAEKVEGMNPNSLISNSGPQNVGTGLAGPPAFNPIKSDSGMSTEVGQYEHQHRCSFASAGSSSSFTPCSNCGGSDHSSMHCPNITSVPRQSMGGVAYANRASSGVGGGVATGECFKCHQTGHWARDCPGLSAAAPSAYGSSFVHGGHEFVQRQQLGGF 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0890 199 Gene3D - 101 184 - -
Lele50g0890 199 SMART c2hcfinal6 154 170 IPR001878 GO:0003676|GO:0008270
Lele50g0890 199 SMART c2hcfinal6 108 124 IPR001878 GO:0003676|GO:0008270
Lele50g0890 199 Pfam Zinc knuckle 154 169 IPR001878 GO:0003676|GO:0008270
Lele50g0890 199 SUPERFAMILY Retrovirus zinc finger-like domains 147 172 IPR036875 GO:0003676|GO:0008270
Lele50g0890 199 ProSiteProfiles Zinc finger CCHC-type profile. 155 169 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0890 Lele-ChrLele50 5596328 5597306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0890 24 136 Core DNA Replication Machinery Family AT5G45400 34.959 7.56e-08 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0890 50 5596328 5597306 Lele50g0890 50 5596328 5597306 ECH
Lele50g0890 50 5596328 5597306 Lele51g0873 51 5357114 5360424 hybridization
Lele50g0890 50 5596328 5597306 Lele52g0872 52 5645099 5647829 hybridization