Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0888 ATGGAGTTCAGCGAGCATGAGAGCATGACAGTTCGAGAAGTCTGTGCAAATGGGAGTTGCATGGGGACAGCAGAAGTTGAAGCAAAGCTTGATGAAGGAGATATTCAAGAGGCAGAATCTTCATTGCGAGAAGGGTTATCGCTCAATTTTGAGGAAGCAAGAGCACTTCTGGGAAAGTTGGAGTATCAGAGAGGGAATGTGGAAGGTGCTCTTCGCGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGCGATTGCAACATTCCGTTCCTGAAAAACCATTAGCCAAGAAGGGGCGCACTCGTGCTGAACCACCTACTTCGGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCACGTTCTCTACAAACTCTAGGGAGATTAACTGAAAGTTTTGCCTTGAGAAAATCCTTTGGTTCACTCTTTACTAGTTCACAGGTTGATGATGGTAAAGTAAACGAATTTGAGATTTGGCATGGTCTGGCAAACCTATATGCTAGTCTTTCTCATTTTAAGGATGCTGAAATATGTGTAATATTTGAAGGACGCGAAGGAGATCAAGATGCTCTTGGTGCTTTCTTTAGTGCATTCATGCTTGATCCAAGCTATGTTCCAAGCAAGATCTTGTTGGGTTCTCTGATGCTAAAACTCGGTTCAAAGGGTTTGCCTGTGGCTAGAAGCTTACTTTCTGAAGCTCTGAGAATAGACCCCACTAACCACAAGGCTTGGTATTATATGGGTATGGTTCACAAAGAGGATGGCAGGATGAGTGATGCCGCCGACTGCTTCCAGGCAGCTTCCATGCTCGAAGAATCAGATCCCATCGAAAGTTTCTGCTCTGTTCTTTGA 867 0.4475 MEFSEHESMTVREVCANGSCMGTAEVEAKLDEGDIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQHSVPEKPLAKKGRTRAEPPTSVSQHAASLVLEAIYLKARSLQTLGRLTESFALRKSFGSLFTSSQVDDGKVNEFEIWHGLANLYASLSHFKDAEICVIFEGREGDQDALGAFFSAFMLDPSYVPSKILLGSLMLKLGSKGLPVARSLLSEALRIDPTNHKAWYYMGMVHKEDGRMSDAADCFQAASMLEESDPIESFCSVL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0888 288 PANTHER PROTEIN NPG1 5 137 IPR043376 -
Lele50g0888 288 ProSiteProfiles TPR repeat profile. 246 279 IPR019734 GO:0005515
Lele50g0888 288 Gene3D Tetratricopeptide repeat domain 23 283 IPR011990 GO:0005515
Lele50g0888 288 SUPERFAMILY TPR-like 30 270 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0888 Lele-ChrLele50 5582674 5585717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0888 139 288 Calmodulin-binding Proteins AT2G43040 56.395 3.21e-58 196
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0888 50 5582674 5585717 Lele51g0869 51 5330421 5333537 hybridization
Lele50g0888 50 5582674 5585717 Lele52g0869 52 5625769 5631162 hybridization