Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0882 ATGGCCGACGACGGTCCTCCGCTCTTCACCACCAATGTCTCCGTCATACTTATCGCCTTGGGCTCCGCCGCCTTCGTCGTCACAATGTACCATCTAATTGCCGTTTGCCTCTGCGGCAACCAATTGACAGACCCTAACTCTGACCAGGCGCAGCAGCAAGCGTCGAGCATCATTGATGAGAATTCGTTGGCGGAGCTAATTCCGGCACACAAGTACAAGAAGATCGACGATGGAGAGGTGACCTGTGCGGTGTGTTTAGGAGATTTCGAAGAAGGCGAAGAGGTGAGAACATTGCCGGAGTGCTCGCACTCTTTTCACGTTCCTTGCATAGATTTGTGGCTCTTCTCTCATCCGAATTGTCCCGTCTGCCGTGCGGATGCCACGCCGTCTCCGGTGGCTCTAACCACCGCGTCGGAGTCTGTTTCCAGTGAATCGAATTCGAACACGACTGACCACCGGATAGATATTTTGCAAAATGCTTTGGTTCAGAGTGTCATGTTGCGACGGTGA 510 0.5314 MADDGPPLFTTNVSVILIALGSAAFVVTMYHLIAVCLCGNQLTDPNSDQAQQQASSIIDENSLAELIPAHKYKKIDDGEVTCAVCLGDFEEGEEVRTLPECSHSFHVPCIDLWLFSHPNCPVCRADATPSPVALTTASESVSSESNSNTTDHRIDILQNALVQSVMLRR 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0882 169 ProSiteProfiles Zinc finger RING-type profile. 82 124 IPR001841 -
Lele50g0882 169 CDD RING-H2_PA-TM-RING 81 124 - -
Lele50g0882 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 129 IPR013083 -
Lele50g0882 169 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 128 IPR044675 -
Lele50g0882 169 SUPERFAMILY RING/U-box 67 130 - -
Lele50g0882 169 Pfam Ring finger domain 81 124 IPR001841 -
Lele50g0882 169 SMART ring_2 82 123 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0882 Lele-ChrLele50 5557756 5558265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0882 43 141 C3H Transcription Factor Family AT3G10910 39.423 5.57e-22 85.9