Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0862 ATGCACCCTTTCTTAGAAAAAAAAGCCTCCTTTCCTTTCGCTCTTCTCTCTCCCCTGCGAGTTACTTTGTCCCATTCACCCAGCTACTGTCCCTGCCATCTCCACCTAAATGCGCGACCTTTACTATCTTCTCGTCTCTACCACTCACTCATCCACTTACAATCCTCTGTTATTTGGACCCATTTCACGGATAACCAGTACATTTCATTAATTCTTCCAACACTGCAAGACCCAGTGATGGGATCCAGTGGTAGTAAAGCCGTTGCTTCTTGCAATGCATCGTCGACGTCGTCGTCTTCGGGAAGTTTTCGTAAGGGTCGATCTAGAGGGCATAGAGGTTTTCAGTCTTATTGTTTAGGAACAACATCTGGATCTCATGACAGTGACAATGACGACCAGGTGTGTGATCAGAATAAAGAAAACGATAGTAATGTTACATACTCCAATGGTGAAGAAACAGAAGCAGATGAGATGATATCAGAGTCTTTAAGAAAGATTAAATCTGATAAAATGCCACGTATCCCTCCTAATGTCCGCCTTGATGAGTGGAGTCAAACAAGCATTTCCAATACTGCATCTAGAACTGGCAGCAGTTCTGATCGTCCGGCTTCAACTCAATCTTTGAACCCTTCAAGTCGATTTCTTTCTCGGTTTAGCCTTATTCCTGGTAACTTAAGCTTCAGACTAAGTAGAACCACAAGCTTGGGGTCATCACGGCCTTGCCCTGTTTCTCCTGCAGGTCTCTCAATATTTAACAATGAAGATGACCTTAATCCACAGCCTGGACCTACTTGCAGCTTGGCTAATCAAAATGAAGCTCTACAATGCAGTGACTTGCTTCCTGCATCACATTGCTATGAAGACACTTCTGTTATTTTAAGGTCTAGTGTCCCATCATCAGATTCCTATGGTAACTTGCGAAACAATTCAACAAATTCTTCTATGCAGAATATGATTAGAGATGAAAATGGTGCAAGAGAAGGGTTAAATATTAACTTATTTTCCCCAAGAATTCATGCCAGAACAGAAAATGTTGAGATGAGACATAATGATCGCCGAAATGGAGTTCGAGAACCTGTTGAACGGAATGTTCGCTTTAGTCGTACTTTGAGTGTTGGAAGGCTTCGTGATAGGGTTCTTCGTCGATCAACAATATCAGACTCCACCTTTTGCCCACTACAACAAGAAAGGGATGCCACAGATGCTAGTCAAGATATTGGAAGACAAGCAGGGGAGAGAGAGTCAAGAGTGCTACCACCTGATAGTGACTCTACAAGTTCCCCTTCTACATCTGGATATCCTCCGTCCAATATGTCTAGCTCCTTGTTTGGGATCCAAGACTATGAGGTTGAGTCGGCACGATCAAGAGAAGCTAGGTATCGTGATCTACTGGAAAATAGATCCAATTTTTCCAATTTCCTAGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAACGATTGGGAAGCCGATTTGAAAACCTGTCTGGGCATGACAGGTCATGTATTTTATCTGGCCAACATAGAAATGGTCGTTGTACATGCCGACTTAGTAATCGTGATGCCAATTCGAATGATGATACTGGGGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTTTATCTTCCCGCCCTTCTGTTTCTTCTATTGGATCTGTTCCTGCACCTTATGAAGTTGTAGAATCCTTGCCTGTCAAATTATACACAAAGTTGCACAAACATCAAGAGGATGCTGCTCAATGCTATATATGCCTCGTGGAGTACGAGGATGGAGACAACATGCGAGTGCTGCCATGTCATCATGAATTTCATTTAACATGCATAGACAAGTGGCTAAAGGAGATTCACAGGGTATGCCCACTATGCCGTAGGGACATCTGCATTGCTAATTCGATACCAGCCGAAAACTGA 1968 0.4314 MHPFLEKKASFPFALLSPLRVTLSHSPSYCPCHLHLNARPLLSSRLYHSLIHLQSSVIWTHFTDNQYISLILPTLQDPVMGSSGSKAVASCNASSTSSSSGSFRKGRSRGHRGFQSYCLGTTSGSHDSDNDDQVCDQNKENDSNVTYSNGEETEADEMISESLRKIKSDKMPRIPPNVRLDEWSQTSISNTASRTGSSSDRPASTQSLNPSSRFLSRFSLIPGNLSFRLSRTTSLGSSRPCPVSPAGLSIFNNEDDLNPQPGPTCSLANQNEALQCSDLLPASHCYEDTSVILRSSVPSSDSYGNLRNNSTNSSMQNMIRDENGAREGLNINLFSPRIHARTENVEMRHNDRRNGVREPVERNVRFSRTLSVGRLRDRVLRRSTISDSTFCPLQQERDATDASQDIGRQAGERESRVLPPDSDSTSSPSTSGYPPSNMSSSLFGIQDYEVESARSREARYRDLLENRSNFSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRLSNRDANSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPYEVVESLPVKLYTKLHKHQEDAAQCYICLVEYEDGDNMRVLPCHHEFHLTCIDKWLKEIHRVCPLCRRDICIANSIPAEN 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0862 655 SUPERFAMILY RING/U-box 578 648 - -
Lele50g0862 655 MobiDBLite consensus disorder prediction 401 419 - -
Lele50g0862 655 MobiDBLite consensus disorder prediction 157 176 - -
Lele50g0862 655 ProSiteProfiles Zinc finger RING-type profile. 600 642 IPR001841 -
Lele50g0862 655 SMART ring_2 600 641 IPR001841 -
Lele50g0862 655 Pfam Ring finger domain 599 642 IPR001841 -
Lele50g0862 655 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 80 654 - -
Lele50g0862 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 564 647 IPR013083 -
Lele50g0862 655 MobiDBLite consensus disorder prediction 139 153 - -
Lele50g0862 655 MobiDBLite consensus disorder prediction 420 441 - -
Lele50g0862 655 MobiDBLite consensus disorder prediction 391 441 - -
Lele50g0862 655 FunFam Putative RING zinc finger domain superfamily protein 569 647 - -
Lele50g0862 655 CDD RING-H2_PA-TM-RING 599 642 - -
Lele50g0862 655 MobiDBLite consensus disorder prediction 86 104 - -
Lele50g0862 655 MobiDBLite consensus disorder prediction 180 210 - -
Lele50g0862 655 MobiDBLite consensus disorder prediction 86 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0862 Lele-ChrLele50 5424363 5428308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0862 315 646 C3H Transcription Factor Family AT5G45290 59.531 3.24e-111 343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0862 50 5424363 5428308 Lele50g0862 50 5424363 5428308 ECH
Lele50g0862 50 5424363 5428308 Lele51g0850 51 5206050 5209828 hybridization