Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0854 ATGAGCCGCAAACCGCCTACAGGGGTTAAGGGCAAGAAGAAGGCTGCGACATTCGTGATCGACTGTGTGAAACTAGTTGAAGATAAGATCATAGATATCACTTCTCTAAAAAAATTCTTTCAGGACAGGATTAAAGTTGGTGGCAAGGCCAATAAAATACAATTGAATTGTAGAAACGTTCTTCTCATTACCTTAATGGCGAGTGATTCTGGCACAAAACCTTCCCCTGCTTCTTCGTCTTCTTCAACTGTAGGGGAATCTTACCTTGGGAGCTTTATCAGTCTGATTTCCAAGTACGAGATTCGTTACGAAGGCGTTTTGTATCACCTCGACGTCCGGGATTCCACCATTGGCTTGAAGAGCGTTAGATCTTATGGGACAGAGGGGAGAAGAATAGATGGTCCACAGGTTCCTCCAAGTGACAAGGTTTATGAATACATTCTTTTTCGAGGAAGTGACATTAAGGATTTGCAGGTCAAGTCCCTCTCTACATTTATCAAAGAAGAGCAGGTATTCAGTGATCCAGCTATTATCCAGTCACAATATTCTGAAGTGCCTTCAAGTTCTCCTATGGCTTCAGTGGGTGGGAGAAGTTTGACAGAATCAATTCAATGGCAAGATACTCTTGCTATGACCCATAGAGATATTCCTCTTCCTGCTGGGTTGCCTTCTCATCAACCTGCAACATTGATGGGCCCATCTGGTCAATCTGCTGTTACTCGTGTTTCTGGTGCTCCTTCTTTCTCCACAACAGTGTATTGGCCAGATTATAGTGGGATATCAGGAAGTTGCTCTGATTCTCTGCTGCAGTCTGGTCCTTTTCAGTCCCCTTCAGGAGTGGCACCTTTAAATACACAGAGCTGGGTCCAAACTCCAGAAAGTCAATTACCTTCTTCAAAAGTGGGCTGGACGAGTTTACCAGAGCATGGTGAACCTGTCTCATCTGTTACCGCTTCATCTCTTGTAAATCCGTCTTATGAACCTTCATCTTCCTCTTTAGAAACTTCTGATTCTCTAGATGCTCCATCTCTTTTCTCTTCTAATACACCATTCCCCTATCATTCTTCTGTGGCTGAGTCGAACATGCCTTCATTTTCTTTACCATTTCAAGGCATAAATTCTGTCAAAGATCAATTACCTGGAAAAATTTCTCCTTATATGGGATCAATGTTTCCTGGACAAGCTGCCCATCATTCTGTTTCTTCATCAGTTGATTCTACTTCAGGCTCCTTGCTTAGACCTCCATCCTTTTTTACTCCAGATCAGTTTTCTCATTCTGGACAGAATTTTGTTTCTTTAGTACAGAACCAGATCCCTGATCAGAATCATATGGTTTCTCTGGCACAACCATCCCCTAGCTCCTCCTTTTTATTACCCTCTCCAGAATTTAAAGCACCATTGTTGCCTTCACCACCATTGCCAACTTCAGTGCACAAGCCTCAGTACGCAGCCTCACAGTTCAGTGAAGAGTTTGATTTTGAGGCCATGAACGAAAAGTTCAAGAAGGATGAAGTATGGGGCTCTCTTGGGAGGGCATCTAAGACAATAGAAGGAATGGAGGGTAATGCTCCAACTGACAGCTTGGCTGACAGAGAGTGTCGTGGGTTTCGACCAAACCTAAACCCCCAGCCTGCATATAGGAAAGACGACTTTTTTGACACAATTTCATGTAACTCTCTCTCTCGTGGATCAAGGAATGGACAGAATCGCCTATCTGAGAGAATGAGGCTGGATTCTGAGACGTTCGGCAATTTTCATCGGAGCCCTGCTATGGGTTATGGTAGCTATGGAAGTGGACGCGGTGAATATTACAAGAACTCATACGCTATGGGAAGGGGTTATAGCTATTATGGTGGAAGAGGGCGTGGCAGGAATATGCCTTTTTATTAG 1890 0.4376 MSRKPPTGVKGKKKAATFVIDCVKLVEDKIIDITSLKKFFQDRIKVGGKANKIQLNCRNVLLITLMASDSGTKPSPASSSSSTVGESYLGSFISLISKYEIRYEGVLYHLDVRDSTIGLKSVRSYGTEGRRIDGPQVPPSDKVYEYILFRGSDIKDLQVKSLSTFIKEEQVFSDPAIIQSQYSEVPSSSPMASVGGRSLTESIQWQDTLAMTHRDIPLPAGLPSHQPATLMGPSGQSAVTRVSGAPSFSTTVYWPDYSGISGSCSDSLLQSGPFQSPSGVAPLNTQSWVQTPESQLPSSKVGWTSLPEHGEPVSSVTASSLVNPSYEPSSSSLETSDSLDAPSLFSSNTPFPYHSSVAESNMPSFSLPFQGINSVKDQLPGKISPYMGSMFPGQAAHHSVSSSVDSTSGSLLRPPSFFTPDQFSHSGQNFVSLVQNQIPDQNHMVSLAQPSPSSSFLLPSPEFKAPLLPSPPLPTSVHKPQYAASQFSEEFDFEAMNEKFKKDEVWGSLGRASKTIEGMEGNAPTDSLADRECRGFRPNLNPQPAYRKDDFFDTISCNSLSRGSRNGQNRLSERMRLDSETFGNFHRSPAMGYGSYGSGRGEYYKNSYAMGRGYSYYGGRGRGRNMPFY 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0854 629 CDD LSm14_N 85 159 IPR025609 -
Lele50g0854 629 ProSiteProfiles DFDF domain profile. 479 515 IPR025762 -
Lele50g0854 629 Pfam FDF domain 486 584 IPR019050 -
Lele50g0854 629 Pfam Ribosomal L22e protein family 13 54 IPR002671 GO:0003735|GO:0005840|GO:0006412
Lele50g0854 629 MobiDBLite consensus disorder prediction 310 341 - -
Lele50g0854 629 ProSiteProfiles TFG box profile. 566 586 IPR025768 -
Lele50g0854 629 Gene3D - 5 64 IPR038526 -
Lele50g0854 629 PANTHER SCD6 PROTEIN-RELATED 81 625 - -
Lele50g0854 629 MobiDBLite consensus disorder prediction 289 341 - -
Lele50g0854 629 Gene3D - 79 164 - -
Lele50g0854 629 SMART FDF_2 485 586 IPR019050 -
Lele50g0854 629 ProSiteProfiles FFD box profile. 544 559 IPR025761 -
Lele50g0854 629 SUPERFAMILY Sm-like ribonucleoproteins 87 160 IPR010920 -
Lele50g0854 629 SMART LSM14_2 82 182 IPR025609 -
Lele50g0854 629 Pfam Scd6-like Sm domain 88 161 IPR025609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0854 Lele-ChrLele50 5336847 5343579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0854 1 53 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 58.491 1.49e-13 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0854 50 5336847 5343579 Lele50g0854 50 5336847 5343579 ECH
Lele50g0854 50 5336847 5343579 Lele51g0840 51 5115098 5126458 hybridization
Lele50g0854 50 5336847 5343579 Lele52g0841 52 5398636 5403419 hybridization