Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0849 ATGGCTGATCGTTTAACTCGTATAGCCATCGTCAGTGATAGGTGTAAGCCTAAAAAGTGCCGACAAGAATGCAAGAAGAGTTGTCCTGTCGTGAGAACCGGTAGATTGTGTATTGAGGTCACTGACAAATCTAAAATTGCTTACATATCCGAGGAACTGTGCATTGGTTGCGGTATCTGTGTCAAGAAATGTCCATTTGAAGCCATCCAGATTATCAACCTGCCAAAGGATCTGGACAAAGACACTACCCACAGATATGGTCCTAACACTTTTAAATTACATAGGTTACCAGTACCCAGGCCAGGTCAAGTGCTTGGTTTGGTTGGAACGAATGGAATTGGAAAGTCCACTGCTCTTAAAGTTCTCGCTGGAAAATTGAAACCTAACTTGGGCCGTTTCAGTAACCCACCTGACTGGCAGGAAATCTTAACCCATTTTCGAGGATCTGAACTGCAAAACTATTTCACTCGCATCCTTGAGGATGATTTGAAGGCCATTATAAAGCCTCAATATGTTGATCACATCCCTAAAGCAGTACCAGGGAATGTGCGGGAGACACTGGACCAGAAAAATGAGAGAGATATGAAGCAAGAACTTTGTAATGATCTTGACCTAAACCAGGTTATAGATCGTAATGTTGCTGATCTTTCTGGTGGGGAGCTCCAAAGGTTTGCCATTGCAGTTGTTGCTATCCAGAATGCTGAAATATACATGTTTGATGAACCTTCTAGTTACCTTGACGTAAAACAGAGGCTGAAAGCTGCCCAAGTTATTCGATCTTTGCTCAGGCCTAATAGCTATGTAATTGTTGTGGAGCATGATCTTAGTGTCTTGGACTATTTGTCAGACTTCATTTGTTGTTTATATGGCAAACCTGGTGCATATGGGGTTGTAACACTTCCTTTCTCAGTCAGAGAAGGAATTAACATCTTCTTGGCTGGTTTTGTCCCAACAGAAAATCTTAGGTTTCGGGACGATTCTCTCACCTTCAAGGTTGCTGAGACTCCGCAAGAGAGTGGCGATGATGCTCAAACATATGCTCGATACAAATACCCAACAATGACCAAAACTCAAGGAAATTTCAAGCTTCGTGTAGTTGAAGGAGAATTTACCGATTCTCAGATTATTGTGATGCTGGGTGAGAACGGTACAGGAAAGACGACTTTTATTCGTATGCTGGCTGGTTTATTGAAACCTGACAGCATAGAAGGTGGCTCTGATACAGAAATGCCCGAGTTTAATGTGTCATACAAGCCTCAGAAGATTAGCCCAAAGTTCCAATCAACAGTCAGACACTTGCTCCATTCAAAAATACGTGATGCATACACACACCCACAGTTTATCTCAGATGTGATGAAGCCACTTCTTATTGAACAGTTAATGGACCAAGAAGTTGTTAATCTTTCTGGTGGAGAGTTGCAAAGAGTTGCATTATGCCTATGTCTTGGAAAGCCTGCAGATATCTATTTGATAGATGAACCCAGTGCATATCTTGATTCAGAGCAGCGTATTCATGCTGCCAAAGTCATCAAGAGGTTTATCCTCCATGCAAAGAAAACTGCATTTGTGGTCGAGCACGATTTTATAATGGCAACATATCTTGCTGATAGAGTTATTGTTTATGAGGGATCTCCTTCAATTGATTGTACTGCTAATTCACCACAATCATTGTTGACTGGGATGAACTTATTCTTATCACACCTGGATATCACCTTTAGAAGAGATCCAACTAACTACCGCCCAAGGATTAACAAACTAGATTCAACCAAAGATCGGGAACAGAAATCAGCTGGCTCATACTATTACCTTGATGACTAA 1818 0.4147 MADRLTRIAIVSDRCKPKKCRQECKKSCPVVRTGRLCIEVTDKSKIAYISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFSNPPDWQEILTHFRGSELQNYFTRILEDDLKAIIKPQYVDHIPKAVPGNVRETLDQKNERDMKQELCNDLDLNQVIDRNVADLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDDSLTFKVAETPQESGDDAQTYARYKYPTMTKTQGNFKLRVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSIEGGSDTEMPEFNVSYKPQKISPKFQSTVRHLLHSKIRDAYTHPQFISDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIHAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGSPSIDCTANSPQSLLTGMNLFLSHLDITFRRDPTNYRPRINKLDSTKDREQKSAGSYYYLDD 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0849 605 Pfam ABC transporter 366 496 IPR003439 GO:0005524
Lele50g0849 605 FunFam ATP-binding cassette sub-family E member 1 333 603 - -
Lele50g0849 605 Gene3D - 3 331 IPR027417 -
Lele50g0849 605 FunFam ATP-binding cassette, sub-family E, member 1 1 331 - -
Lele50g0849 605 Pfam 4Fe-4S binding domain 48 70 IPR017896 -
Lele50g0849 605 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 568 IPR003439 GO:0005524
Lele50g0849 605 SUPERFAMILY 4Fe-4S ferredoxins 10 84 - -
Lele50g0849 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 541 IPR027417 -
Lele50g0849 605 SMART AAA_5 101 293 IPR003593 -
Lele50g0849 605 SMART AAA_5 372 545 IPR003593 -
Lele50g0849 605 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 45 74 IPR017896 -
Lele50g0849 605 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 605 IPR013283 -
Lele50g0849 605 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 7 36 IPR007209 -
Lele50g0849 605 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 54 65 IPR017900 -
Lele50g0849 605 ProSitePatterns ABC transporters family signature. 216 230 IPR017871 GO:0005524|GO:0016887
Lele50g0849 605 PRINTS ABC transporter family E signature 155 181 IPR013283 -
Lele50g0849 605 PRINTS ABC transporter family E signature 51 75 IPR013283 -
Lele50g0849 605 PRINTS ABC transporter family E signature 139 155 IPR013283 -
Lele50g0849 605 PRINTS ABC transporter family E signature 106 131 IPR013283 -
Lele50g0849 605 PRINTS ABC transporter family E signature 23 38 IPR013283 -
Lele50g0849 605 PRINTS ABC transporter family E signature 78 98 IPR013283 -
Lele50g0849 605 CDD ABC_RNaseL_inhibitor_domain1 77 331 IPR034348 -
Lele50g0849 605 CDD ABC_RNaseL_inhibitor_domain2 349 598 - -
Lele50g0849 605 Gene3D - 334 603 IPR027417 -
Lele50g0849 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 288 IPR027417 -
Lele50g0849 605 Pfam ABC transporter 101 243 IPR003439 GO:0005524
Lele50g0849 605 ProSitePatterns ABC transporters family signature. 468 482 IPR017871 GO:0005524|GO:0016887
Lele50g0849 605 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 314 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0849 Lele-ChrLele50 5274549 5278846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0849 96 278 Calmodulin-binding Proteins AT2G36910 27.461 1.51e-06 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0849 50 5274549 5278846 Lele50g0849 50 5274549 5278846 ECH
Lele50g0849 50 5274549 5278846 Lele51g0835 51 5053514 5057335 hybridization
Lele50g0849 50 5274549 5278846 Lele52g0836 52 5338821 5342636 hybridization