Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0813 ATGAGTAATCGAAAGCTGAGCGAATCTGATCTGATTTGCGCAAAGCCTCATCCTCGATGGAATCGAGATGACTCAATTTCTGAAAGATATGATATATTTCTTGGCAGTAAGGGAATTAATGAGGAAGGTGAGGCACTTGATCCTGCTATTTGTTGGGGAATTTTGAAGGCAAAGTGTGAATGGGTGTTTAATGCAGTAAGGGGGGATGCTGAGAAGGTCATAGCAGTGGCCTCTATGCTGGTACAAGAAGTGGAATGGCAAAGTGCATCTATTTTGTCTGAGATCCTTCTACTAATTGAGGAGAGGTCAGATGTGTTTTTTTCCTTGCTTGCCTGCCAAGGCAATAGTGCTGCAGATCTTCTAGCAGCTGAAGGAAGCAGATGGGTGGCTGGAGATAGCATCATCTCTCTTGGGCGAGTTGGTGAACTTGAGCGGGACATCCTCGAACTGCCTAAGAAGATGACAGAAGTAGCGAGCTCAGTTGTGCACGAGGTGCTGGGACGACGGGTCGACGATGTGGATCAGCCGATTATTGATTATATTATCAACGTCCTCGCAGATGATGACTTTGATTTTGGAGATGATGGAGAAGGCGTCTTCGATTTTCTCGGGGAGCTACTCGTTAGTGCCGGCTGTGTCGACGACTTCTCTGAGTGTCGCACTGTATGTAGCAAATTGTCTGAAAAATTTGGAAAGCATGGGTTGGTCAAAGCCAAACCGACCGTGCGAAGCCTTGCAGCACCCGTCAGAATGGATGACGGAATGGATGATGGGGTAGCTCCTAAGAAGAAGCGTGAGCCTACCGATGGTCCTTTGCTAACTGAACGTGACCGTGTAAAGCTAGAAAGAAGAAAGAGGAAGGATGAACGCCAAAGGGAGGCACAGTACCAAATTCATCTAGCAGAAATGGAAGCAGCCCGAGAAGGGATGCCTGTTGTATGTGTTAGGCATGATAATAGTGGTGGAGCAGCTGTCAAGGACATTCACATGGAGAACTTCAATATTTCTGTTGGTGGCCGTGATCTCATTGAGGATTGTTCAATCACACTCTCATTTGGAAGGCATTATGGTCTTATTGGAAGAAATGGTACTGGGAAAACAACATTCCTCAGGCATATGGCTATGCATGCTATTGATGGTATACCAATTAATTGTCAGATATTGCATGTGGAACAAGAGGTAGTTGGTGACGATACAACAGCCTTGCAGTGTGTTCTCAATTCGGATATTGAGAGAACTCAACTTCTGGAGGAAGAAGCTCGATTACTTGCCCAACAGAGAGAGTTGGAGTCTGGGGATGTAACTGCAAAGGGCAATGATGCCATTTCACAGAGACTTGAGGAAATCTACAAGAGGCTTGATTTTATTGATGCTTACTCTGCAGAGTCACGTGCAGCTTCAATACTTGCAGGCCTAAGTTTCTCTCCTGAGATGCAAAAGAGGGCGACAAAAACTTTCTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCACTGTTTATAGAACCCGACTTGTTGCTTCTTGATGAACCTACGAACCATCTTGATCTTCATGCTGTCTTATGGCTGGAATCTTACTTGGTTAAGTGGCCAAAAACGTTCATAGTTGTTTCTCATGCTAGAGAATTTTTGAACACGGTGGTGACTGACATAATTCATCTACAAGCTAAAAAGTTGATTACTTATAAAGGGGATTATGATACTTTTGAGAAGATTCGAGAAGAACAGCTTAAAAACCAGCAAAAAGCAGTGGAGGCAAATGAACGTGCAAGGGCTCATATGCAGTCTTTCATTGACAAGTTCCGTTATAATGCCAAGAGGGCATCGCTTGTTCAATCAAGAATTAAGGCTTTGGACCGGATGGGTCGTGTGGATGAAATTATCAATGATCCTGACTACAAGTTTGAGTTCCCAACTCCAGATGATAGACCTGGTGCACCAATAATAAGTTTCAGTGATGCATCGTTTGGTTACCCTGGGGGCCCAATTCTATTTAAGAATTTGAATTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCCAATGGTATTGGCAAATCTACCATACTTAAGTTAATTGCAGGGGAACTACAACCCATTTCTGGGACAGTTTTTCGTTCTGCCAAGGTTCGTATAGCAGTCTTCAGTCAGCATCACGTTGATGGACTAGACTTATCTTCGAATCCCCTTTTGTATATGATGCGCTGCTATCCTGGTGTTCCTGAACAGAAGCTTCGAGCTCACTTGGGCTCTTTTGGTGTAACTGGAAATCTTGCACTTCAACCGATGTATACACTGTCAGGGGGACAAAAAAGCAGGGTTGCATTTGCGAAGATAACTTTCAAGAAACCACACATAATATTGCTTGATGAACCTTCCAATCACCTGGACTTGGATGCTGTTGAGGCGCTAATTCAAGGTCTTGTTATGTTCCAAGGAGGCATTCTAATGGTGAGTCATGATGAGCACCTAATATCTGGAAGCGTGGAGGAGCTATGGGTTGTATCCGAAGGAAGAGTGAGCCCATTCCACGGCACCTTCCAAGATTATAAGAAGATACTCCAGTCATAG 2580 0.4446 MSNRKLSESDLICAKPHPRWNRDDSISERYDIFLGSKGINEEGEALDPAICWGILKAKCEWVFNAVRGDAEKVIAVASMLVQEVEWQSASILSEILLLIEERSDVFFSLLACQGNSAADLLAAEGSRWVAGDSIISLGRVGELERDILELPKKMTEVASSVVHEVLGRRVDDVDQPIIDYIINVLADDDFDFGDDGEGVFDFLGELLVSAGCVDDFSECRTVCSKLSEKFGKHGLVKAKPTVRSLAAPVRMDDGMDDGVAPKKKREPTDGPLLTERDRVKLERRKRKDERQREAQYQIHLAEMEAAREGMPVVCVRHDNSGGAAVKDIHMENFNISVGGRDLIEDCSITLSFGRHYGLIGRNGTGKTTFLRHMAMHAIDGIPINCQILHVEQEVVGDDTTALQCVLNSDIERTQLLEEEARLLAQQRELESGDVTAKGNDAISQRLEEIYKRLDFIDAYSAESRAASILAGLSFSPEMQKRATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQAKKLITYKGDYDTFEKIREEQLKNQQKAVEANERARAHMQSFIDKFRYNAKRASLVQSRIKALDRMGRVDEIINDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPISGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVMFQGGILMVSHDEHLISGSVEELWVVSEGRVSPFHGTFQDYKKILQS 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0813 859 Gene3D - 614 859 IPR027417 -
Lele50g0813 859 CDD ABCF_EF-3 650 842 - -
Lele50g0813 859 Pfam ABC transporter 553 633 IPR032781 -
Lele50g0813 859 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 311 858 - -
Lele50g0813 859 Gene3D - 321 613 IPR027417 -
Lele50g0813 859 CDD ABCF_EF-3 328 559 - -
Lele50g0813 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 584 IPR027417 -
Lele50g0813 859 FunFam ABC transporter F family member 3 280 595 - -
Lele50g0813 859 ProSitePatterns ABC transporters family signature. 486 500 IPR017871 GO:0005524|GO:0016887
Lele50g0813 859 SMART AAA_5 352 559 IPR003593 -
Lele50g0813 859 SMART AAA_5 675 842 IPR003593 -
Lele50g0813 859 MobiDBLite consensus disorder prediction 252 271 - -
Lele50g0813 859 MobiDBLite consensus disorder prediction 255 271 - -
Lele50g0813 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 851 IPR027417 -
Lele50g0813 859 Pfam ABC transporter 344 514 IPR003439 GO:0005524
Lele50g0813 859 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 328 582 IPR003439 GO:0005524
Lele50g0813 859 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 650 859 IPR003439 GO:0005524
Lele50g0813 859 FunFam ATP-binding cassette sub-family F member 3 612 859 - -
Lele50g0813 859 Pfam ABC transporter 667 797 IPR003439 GO:0005524
Lele50g0813 859 ProSitePatterns ABC transporters family signature. 769 783 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0813 Lele-ChrLele50 5008067 5022440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0813 607 811 Calmodulin-binding Proteins AT2G36910 26.160 6.98e-10 61.2