Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0784 ATGAATTCCTGCAACATCGAACGATCCTGTGTGTTGGATTTCATTACAGTCCTATTACCTTGCCTAGCTATAATGGCTAACTTCCCAGGTTGTTACTTCTTGCTTTCAATACTACTTTTCCTTCTTCACATAACAAGAACCACTCAACAAACATGTGAAACAAGATACTGCGGAGACCCTTCACTGGGACCCTCAATTCGGTACCCTTTTTATTTGAAACGAGTTCAAAGCGATGCTTGTGGGTACCCAAACTTCGGAGTTTACTGCGACAACCTCAACCAGACATTGATCACACTCGGAAATGCCGGAGATTTTGTTGTCAAACATATCTCTTTCAAGGACCACGAAGCTTGGATGAATGACCCAAATCACTGTCTTCCTTCACGCTTCCTCAACGGCTTAGACCTTCAACTTCAAGCTTCGCCATTCCGATGGAGCTTCGTTTACTTCAGTTCCCTCAACGTTGACTTTCTCAACTGTACTTCCCCAGTGCCTGACTCCGTTCAGTTCGCTCACAAAATACCATGCCTCAGCAGTATCGACGGCGACAATTTCTCGGTGGTCGCTGTTTTGTCGTATCCTTCATCTCCAACAACATCGATCCCAGGATGCCGACATATTTCCTCGTCTTCAGTTCCAGTTAAAAGTTTCGAACGACCCGAGCAATTCTGGAAGAACCTTTACTCCGATATTCGGTTGAGATGGAGCGAACCTAACTGCATGCTTCCCACGAATCCGGATTCTGATGATGAAGACACTTGCTATAACAATTTTCTCTACCCAGATCCTCCACATTACAAGATCTACCAAATGTTATTAGCGGTGGGAGTAGCTGGAACGGTATGCTTTTGTGTGGCCGGACTAGCACGTTTATGCGGGGCTAAGGTGGATCTGGACGGTTTGCCATGGCGGCAGCGGCGGCGAATGAACGTGGAGTTAGAGAGGAACACGGCGGAATCAATTGATGTGGGAATGGGGCTTGATGAGTCAACCATTGAACAGTATCCGAAAACACAAGTTGGTGACAGTGGAAGATTGCCCAATCCTGGTGACAGTGTTTGCTCTATATGTCTCAGCGAGTATGAGCCACTTGACACATTGAGAACCATTCCTCACTGTAATCACTATTTTCATGCCCATTGTATAGATGGTTGGCTCAAGAAGAAGGGCACGTGCCCTCTGTGTCGTCATCTTCCTCACGCTTCTTCATTGTCCCTCTCTTTAGCATCTCATCCACCACCGTTGATCCCCACTTAA 1257 0.4646 MNSCNIERSCVLDFITVLLPCLAIMANFPGCYFLLSILLFLLHITRTTQQTCETRYCGDPSLGPSIRYPFYLKRVQSDACGYPNFGVYCDNLNQTLITLGNAGDFVVKHISFKDHEAWMNDPNHCLPSRFLNGLDLQLQASPFRWSFVYFSSLNVDFLNCTSPVPDSVQFAHKIPCLSSIDGDNFSVVAVLSYPSSPTTSIPGCRHISSSSVPVKSFERPEQFWKNLYSDIRLRWSEPNCMLPTNPDSDDEDTCYNNFLYPDPPHYKIYQMLLAVGVAGTVCFCVAGLARLCGAKVDLDGLPWRQRRRMNVELERNTAESIDVGMGLDESTIEQYPKTQVGDSGRLPNPGDSVCSICLSEYEPLDTLRTIPHCNHYFHAHCIDGWLKKKGTCPLCRHLPHASSLSLSLASHPPPLIPT 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0784 418 Pfam Wall-associated receptor kinase galacturonan-binding 52 121 IPR025287 GO:0030247
Lele50g0784 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 401 IPR013083 -
Lele50g0784 418 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 34 398 - -
Lele50g0784 418 ProSiteProfiles Zinc finger RING-type profile. 354 396 IPR001841 -
Lele50g0784 418 SUPERFAMILY RING/U-box 348 398 - -
Lele50g0784 418 CDD RING-H2_PA-TM-RING 353 396 - -
Lele50g0784 418 Pfam Ring finger domain 354 396 IPR001841 -
Lele50g0784 418 SMART ring_2 354 395 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0784 Lele-ChrLele50 4832922 4834957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0784 50 399 C3H Transcription Factor Family AT2G46495 31.831 2.96e-43 153