Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0763 ATGGCTGAGATAAGTGCCGAAGTGTCATTCGATCAAGTCCCGTCGAGGAAGCAGCGAAGCCGAAGAGCGTTGAAGGATAAAAATCCCTCAACCAATGATGTCAAATCCTGGGCCAAGAAGCTGCCCGATTCCTCCACATCACCGAATTTGCCTATGCTGAGAGACCAGGAGCAAGAAAAGGACAAGAAGAAGAAGAATGTATGTGCTGTGAAAAGGCCTTCACCACCTTACATTTTGTGGAGCAAAGATCAATGGGTTGAGATCAAGAAAGCGAATCCAGAGGCAGAATTCAAGGAAATTTCAAACATTTTAGGGGCTAAATGGAAGACCATCAGTGAAGAAGAGAAACAGCCTTATGAGGAGAAATATCTGATTGAGAAAGAAGCGTATCTGCGGGTAATCACGAAGGAGAGACGTGAAGGTGAAGCGATGAAGCTCTTAGAGGAGGAGCAAAAGCAGAAGACTGCCATGGAATTGCTCGAACAGTATATGCTTTTCAAACAAGAAACACAGAAAGAAAGCAAGAAGAACAGAAAAGAGAAGGATCCATTGAAACCAAAGCATCCTGTGTCGGCTTTTCTGTTGTACACGAATGATAGGCGGGCAGCTATTCTTGCGGAGAACAAGAGTGTCTTGGAGAAGTCGAAGAAGAAGAAGAAGCAGAGCAAGGAAGATAAGAATTGTGATCCCAACAAGCCAAAGAGACCACCATCCTCATTTCTGCTATTCAGCAAAGAAGCAAGGAAGAGGATACAGGAGGAAAGACCAGGGATGAATAACTCAACCGTGACCGCACTGATATCAGTGAAATGGAAGGAACTGAGGGAGGAAGAGAGAAAAATGTGGAACGACAAAGCGGCGGAGGCAATGGAGGCATACAAGAAGGAATTGGAGGAGTACAATAAATGCATAGCAGCTAAGTTGGACCAGAAAACGGAAGAATGA 945 0.4476 MAEISAEVSFDQVPSRKQRSRRALKDKNPSTNDVKSWAKKLPDSSTSPNLPMLRDQEQEKDKKKKNVCAVKRPSPPYILWSKDQWVEIKKANPEAEFKEISNILGAKWKTISEEEKQPYEEKYLIEKEAYLRVITKERREGEAMKLLEEEQKQKTAMELLEQYMLFKQETQKESKKNRKEKDPLKPKHPVSAFLLYTNDRRAAILAENKSVLEKSKKKKKQSKEDKNCDPNKPKRPPSSFLLFSKEARKRIQEERPGMNNSTVTALISVKWKELREEERKMWNDKAAEAMEAYKKELEEYNKCIAAKLDQKTEE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0763 314 CDD HMGB-UBF_HMG-box 71 134 - -
Lele50g0763 314 MobiDBLite consensus disorder prediction 207 259 - -
Lele50g0763 314 Gene3D High mobility group box domain 167 214 IPR036910 -
Lele50g0763 314 MobiDBLite consensus disorder prediction 207 232 - -
Lele50g0763 314 MobiDBLite consensus disorder prediction 1 69 - -
Lele50g0763 314 Gene3D High mobility group box domain 54 136 IPR036910 -
Lele50g0763 314 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 233 301 IPR009071 -
Lele50g0763 314 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 52 216 IPR044601 GO:0003677
Lele50g0763 314 CDD HMGB-UBF_HMG-box 233 298 - -
Lele50g0763 314 Coils Coil 283 314 - -
Lele50g0763 314 MobiDBLite consensus disorder prediction 34 53 - -
Lele50g0763 314 MobiDBLite consensus disorder prediction 54 68 - -
Lele50g0763 314 SUPERFAMILY HMG-box 58 133 IPR036910 -
Lele50g0763 314 SUPERFAMILY HMG-box 220 300 IPR036910 -
Lele50g0763 314 MobiDBLite consensus disorder prediction 14 33 - -
Lele50g0763 314 SMART hmgende2 69 139 IPR009071 -
Lele50g0763 314 SMART hmgende2 232 302 IPR009071 -
Lele50g0763 314 Pfam HMG (high mobility group) box 233 301 IPR009071 -
Lele50g0763 314 Pfam HMG (high mobility group) box 70 132 IPR009071 -
Lele50g0763 314 Gene3D High mobility group box domain 215 312 IPR036910 -
Lele50g0763 314 SUPERFAMILY HMG-box 177 217 IPR036910 -
Lele50g0763 314 MobiDBLite consensus disorder prediction 169 187 - -
Lele50g0763 314 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 70 138 IPR009071 -
Lele50g0763 314 MobiDBLite consensus disorder prediction 169 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0763 Lele-ChrLele50 4704509 4706618 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele50g0763 HMG_box 1.7e-17 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0763 50 4704509 4706618 Lele50g0763 50 4704509 4706618 ECH
Lele50g0763 50 4704509 4706618 Lele51g0744 51 4509171 4511237 hybridization
Lele50g0763 50 4704509 4706618 Lele52g0751 52 4749737 4751843 hybridization