Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0756 ATGACTGCGCCTTCCATTAGATACACCCGCCACACTAAACTCGTCATGCCGGAGGAGCAACACCATCTGTGCTGCGGAATGGAGTATCCCAGAGTTGTTAGAATATTCGTGACAGATGGCGATGCCACGGATTCATCCAGCGACGAAGGAGGAGGAGCTATCACGCGCCACCGCGGTAGGAGGTTCGTCAACGAGGTCACCATCACCCAAAACGATGTCGTTGCTAAGCCTGAGAGCAAGCGTCGGAAGAGTAATAGGAGGAGTAGAGTAATGGGAAGTGGGCGGGCGAAGAAGGCGTCGGCGGGGAAGAAGTTCAGGGGAGTGAGACAGAGGCCGTGGGGGAAATGGGCGGCGGAGATCAGAGATCCTCTGCGACGTGTACGGTTGTGGTTGGGAACGTACGAAACTGCAGAGGAAGCTGCGATGGTGTACGATAAAGCAGCCATTAAGCTGAGAGGAGCAGAGGCACTGACGAATTTCATAACGCCACCGGGGAAGGAGGAGTGCGAGGAGAAGAAAAAGTTGAGGTCCCCGAAATCTGTTCTTCAGTCTCAGAGTGGTAGTTTGTCAGAGGAGGTTGAATCTGCAACAACAACCAAAGATGACATGATCAGTGAATGTCAGGAGGAATCACCGTCCTCATCGTGGTCAACAGGGTTGTCGGAGAATTCCTCAGGTTTTCCGGCGGACATATTCGACTTCCAGACATCGTTGCCGGATATATTTGACGAGACAAATATTACAGAAAGCATCTACTCCGATGCGTGGATGAGTCCAACGGAGAACTTAAACATGGGTTTGGATTTCGAATCGGGTTTCGGATTCTCGAGTTGGCATAGAGATGACTATTTCCAAGATATCGGCGATTTGTTTGTTACAGATCCGCTTGTTGCTCTGTGA 900 0.5111 MTAPSIRYTRHTKLVMPEEQHHLCCGMEYPRVVRIFVTDGDATDSSSDEGGGAITRHRGRRFVNEVTITQNDVVAKPESKRRKSNRRSRVMGSGRAKKASAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYETAEEAAMVYDKAAIKLRGAEALTNFITPPGKEECEEKKKLRSPKSVLQSQSGSLSEEVESATTTKDDMISECQEESPSSSWSTGLSENSSGFPADIFDFQTSLPDIFDETNITESIYSDAWMSPTENLNMGLDFESGFGFSSWHRDDYFQDIGDLFVTDPLVAL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0756 299 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Lele50g0756 299 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Lele50g0756 299 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Lele50g0756 299 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Lele50g0756 299 MobiDBLite consensus disorder prediction 179 194 - -
Lele50g0756 299 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Lele50g0756 299 MobiDBLite consensus disorder prediction 80 104 - -
Lele50g0756 299 SUPERFAMILY DNA-binding domain 104 160 IPR016177 GO:0003677
Lele50g0756 299 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Lele50g0756 299 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 205 - -
Lele50g0756 299 MobiDBLite consensus disorder prediction 208 222 - -
Lele50g0756 299 CDD AP2 103 160 IPR001471 GO:0003700|GO:0006355
Lele50g0756 299 MobiDBLite consensus disorder prediction 75 104 - -
Lele50g0756 299 FunFam Ethylene-responsive transcription factor 2 103 162 - -
Lele50g0756 299 MobiDBLite consensus disorder prediction 166 222 - -
Lele50g0756 299 PIRSF PTI6 2 211 IPR017392 GO:0003700
Lele50g0756 299 PIRSF PTI6 231 279 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0756 Lele-ChrLele50 4659277 4660176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0756 1 299 AP2-EREBP Transcription Factor Family AT4G23750 39.782 1.01e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele50g0756 AP2 4.3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0756 50 4659277 4660176 Lele51g0737 51 4463122 4464018 hybridization
Lele50g0756 50 4659277 4660176 Lele52g0742 52 4710348 4711247 hybridization