Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0725 ATGAAGGGAGATGTTCATGGTCAGTTTTCAGATCTTTTAAGGTTGTTTGAGTATGGAGGATACCCACCAGAAGCCAATTATTTGTTTCTTGGTGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATCTGTTTACTCCTTGCTTACAAGATCAAATACAAGGAGAACTTCTTTCTTCTCAGGGGAAACCACGAATGTGCTTCCATCAATCGTATATATGGATTTTATGATGAGTGCAAGAGGAGGTTTAATGTTCGCCTCTGGAAGACATTTACAGACTGCTTTAATTGTTTGCCTGTTGCTGCGCTTATAGATGAGAAGATCCTTTGCATGCACGGTGGACTATCTCCTGATCTTAAAAATTTGGATCAGATTAGAAATGTTGCTCGCCCTATTGACGTGCCTGATCAGGGCCTTCTCTGTGACCTGCTCTGGGCTGATCCTGATAAAGATCTTGATGGCTGGGGAGAAAATGACCGGGGTGTCTCATTTACATTTGGAGCTGATAAGGTTGTTGAATTTCTTGAAAAACACGATCTTGATCTGATTTGCAGAGCTCACCAGGTTGTTGAAGATGGATATGAGTTTTTTGCAAAGCGTCAGCTAGTGACCGTATTCTCTGCCCCAAATTACTGTGGCGAGTTTGATAATGCTGGTGCTATGATGAGTGTGGATGACACCTTGACATGCTCTTTCCAGATCCTCAAAGCTTCTGACAAGAAAGGGAAGGGTGGATTTGGAAACAGCACGCTAAGACCAGGAACTCCACCCCACAAGGGTGGTAAGGGTTGA 795 0.4327 MKGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALIDEKILCMHGGLSPDLKNLDQIRNVARPIDVPDQGLLCDLLWADPDKDLDGWGENDRGVSFTFGADKVVEFLEKHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASDKKGKGGFGNSTLRPGTPPHKGGKG 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0725 264 Pfam Calcineurin-like phosphoesterase 3 190 IPR004843 GO:0016787
Lele50g0725 264 SMART pp2a_7 1 240 IPR006186 GO:0016787
Lele50g0725 264 FunFam Serine/threonine-protein phosphatase 1 249 - -
Lele50g0725 264 SUPERFAMILY Metallo-dependent phosphatases 3 240 IPR029052 -
Lele50g0725 264 MobiDBLite consensus disorder prediction 244 264 - -
Lele50g0725 264 ProSitePatterns Serine/threonine specific protein phosphatases signature. 61 66 IPR006186 GO:0016787
Lele50g0725 264 PRINTS Serine/threonine phosphatase family signature 94 120 IPR006186 GO:0016787
Lele50g0725 264 PRINTS Serine/threonine phosphatase family signature 123 150 IPR006186 GO:0016787
Lele50g0725 264 PRINTS Serine/threonine phosphatase family signature 180 200 IPR006186 GO:0016787
Lele50g0725 264 PRINTS Serine/threonine phosphatase family signature 27 54 IPR006186 GO:0016787
Lele50g0725 264 PRINTS Serine/threonine phosphatase family signature 60 84 IPR006186 GO:0016787
Lele50g0725 264 PRINTS Serine/threonine phosphatase family signature 202 218 IPR006186 GO:0016787
Lele50g0725 264 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 3 241 - -
Lele50g0725 264 Gene3D - 1 248 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0725 Lele-ChrLele50 4463460 4466021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0725 3 183 Calmodulin-binding Proteins AT5G63870 31.019 2.90e-26 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0725 50 4463460 4466021 Lele50g0725 50 4463460 4466021 ECH
Lele50g0725 50 4463460 4466021 Lele51g0709 51 4281143 4285950 hybridization