Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0723 ATGGCAACCGAACTTGAAAAGAAAGCCAAGGAAGCGTTCTTCGACGATGACTTCTCTCTTGCCGTTCAATTGTACTCTCAAGCAATCGACTTGGATCGCTCCAACGCCGATCTTCTTGCTGATAGAGCTCAGGCCTACATTAAACTTAACAACCTCACTGAAGCGGCTTCGGATGCAAGCAAAGCAATCGAATTGAACCCGTCGTTGACAAAAGCATATCTTCGTAAGGGGACTGCATGCTTAAAGCTTCAAGAGTATCATAATGCTAAGGTGGCGCTTGAAACTGGTGCTTCTTTGTCTCAAAACGATTCAAGATTCACCAAGTTGATCGAAGAATGTAATCGCCATGTTACAAAGGAATCCAATGGTCTCAGTAGCCCTTTATCATCAAATAATGGGGCAGCATTGTCTCTATCGCCTAGTAAAACTGAAGAAGATGGAAGATTTAGTCGTGCATATCAAGCACAAACTGATACCTCTGCGAAAACAAGATACAGACATGAATACTACCAAAAGCCAGAAGAAGTGGTTTTGACAATTTTCGCGAAAGGAATACCCGCAAAAAATGTGGTTGTTCAGTTTGGTGAACAAATTCTGAGCGTTACTATGGATGTCCCTGGCCAAGAAGCCTACCACTATCAATCTCGATTGTTTGGAAAGATAATACCTGATAAGTGCAGATTTGAAGTGCTGTCGACCAAAATTGAAATCCGTCTAGCAAAAGCTGAAACCATTAATTGGACATCTTATGAATACGGCAAGGATGCACTTCCTCAGACAAGAATTATCCCATCAGCTGGATCTCATAGGCCTGCATACCCATCATCAAAGCCTAAGAAAGATTGGGATAAGCTGGAAGCTCAAGTGAAGAAAGAAGAGAAGGAAGAAAAGCTAGATGGTGATGCTGGTTTGAACAAGCTGTTCCGAGATATATTCCAAAATGCAGATGAGGACATGAGAAGAGCCATGACCAAGTCTTTTGTTGAATCGAATGGGACTGTTCTGTCAACAGACTGGAAAGAAGTGGGAGCAAAGAAGGTGGAAGGAAGTCCTCCGGATGGTATGGAGCTGAAGAAATGGGAATATTGA 1089 0.4261 MATELEKKAKEAFFDDDFSLAVQLYSQAIDLDRSNADLLADRAQAYIKLNNLTEAASDASKAIELNPSLTKAYLRKGTACLKLQEYHNAKVALETGASLSQNDSRFTKLIEECNRHVTKESNGLSSPLSSNNGAALSLSPSKTEEDGRFSRAYQAQTDTSAKTRYRHEYYQKPEEVVLTIFAKGIPAKNVVVQFGEQILSVTMDVPGQEAYHYQSRLFGKIIPDKCRFEVLSTKIEIRLAKAETINWTSYEYGKDALPQTRIIPSAGSHRPAYPSSKPKKDWDKLEAQVKKEEKEEKLDGDAGLNKLFRDIFQNADEDMRRAMTKSFVESNGTVLSTDWKEVGAKKVEGSPPDGMELKKWEY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0723 362 Gene3D Tetratricopeptide repeat domain 1 125 IPR011990 GO:0005515
Lele50g0723 362 Gene3D - 163 253 IPR008978 -
Lele50g0723 362 MobiDBLite consensus disorder prediction 264 285 - -
Lele50g0723 362 MobiDBLite consensus disorder prediction 120 139 - -
Lele50g0723 362 FunFam Protein SGT1 homolog 1 127 - -
Lele50g0723 362 Pfam CS domain 166 241 IPR007052 -
Lele50g0723 362 Pfam SGS domain 280 360 IPR007699 -
Lele50g0723 362 ProSiteProfiles CS domain profile. 162 251 IPR007052 -
Lele50g0723 362 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Lele50g0723 362 CDD p23_CS_SGT1_like 168 251 - -
Lele50g0723 362 SMART tpr_5 2 35 IPR019734 GO:0005515
Lele50g0723 362 SMART tpr_5 36 69 IPR019734 GO:0005515
Lele50g0723 362 SMART tpr_5 70 103 IPR019734 GO:0005515
Lele50g0723 362 FunFam Protein SGT1 homolog A 160 263 - -
Lele50g0723 362 ProSiteProfiles SGS domain profile. 272 362 IPR007699 -
Lele50g0723 362 PANTHER PROTEIN SGT1 HOMOLOG 1 360 IPR044563 GO:0051087
Lele50g0723 362 SUPERFAMILY HSP20-like chaperones 154 256 IPR008978 -
Lele50g0723 362 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Lele50g0723 362 MobiDBLite consensus disorder prediction 120 157 - -
Lele50g0723 362 Pfam Tetratricopeptide repeat 71 102 IPR019734 GO:0005515
Lele50g0723 362 Pfam Tetratricopeptide repeat 36 68 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0723 Lele-ChrLele50 4436838 4439406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0723 1 158 U-box Gene Family AT3G07370 24.855 4.45e-06 45.8