Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0707 ATGATTATTCCCGAGAAGAACCGTCGCGAGATCTGTAAATACCTCTTCAAAGGTTCCGTAATCTCGCGCTTTTGCTATGCAAAGAAGGACTTCAATATGCCTAAGCACCCCGAGATTGATGTGCCGAATCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCCAAGGAGTACGTGCGGGAGACATTTGCTTGGATGCACTACTACTGGTACCTCACTAACGATGGCATTGAGTTCCTTAGAACTTACCTCAACCTTCCTTCCGAAATCGTGCCCGCTACTTTGAAGAAACAAGCTAAGCCAGCTGGCAGACCATTTGGTGGCCCACCTGGTGACCGTCCAAGGGGTCCACCTCGCTTTGAGGGAGAACGTAGGTTTGGCGACCGTGATGGATACCGTGGAGGTCCCCGAGGACCCGGTGGTGACTTTGGAGACAAGGGAGGAGCTCCGGCTGACTACAGACCTTCATTCGGGGGTTCTGGAGGAAGGCCTGGATTTGGTCGTGGTGCTGGTGGGGAGAGAGACCGTCTTGTTGCCGCCTTCGCCTCCACTCCTACCTTGCAACCATGGTGTGCTTTCTTTCTCGTTCTCCTTTCTGCGGAAAATATTATTCCCGAGAAGAACCGTCGCGAGATCTGTAAATACCTCTTCAAAGAGGGAGTTTGCTATGCAAAGAAGGACTTCAATATGCCTAAGCACCCCGAGATTGATGTGCCGAATCTACAAGTGATTAAGCTGATGCAGAGCTTTAAGTCCAAGGAGTACGTGCGTGAGACATTTGCTTGGATGCACTACTACTGGTACCTCACTAACGATGGCATTGAGTTCCTTAGAACTTACCTCAACCTTCCTTCCGAAATCGTGCCCGCTACTTTGAAGAAACAAGCTAAGCCAGCTGGCAGACCATTTGGTGGCCCACCTGGTGACCGTCCAAGGGGTCCACCTCGCTTTGAAGGAGAGCGTAGGTTTGGCGACCGTGATGGATACCGTGGAGGCCCCCGAGGACCCGGTGGTGACTTTGGAGACAAGGGAGGAGCTCCGGCTGACTACAGGCCTTCATTCGGGGGTTCTGGAGGACGACCTGGATTTGGTCGTGGCGCTGGTGGTTTTGGAGCACCAACAAGCTCAAATCTTTCATAA 1140 0.5184 MIIPEKNRREICKYLFKGSVISRFCYAKKDFNMPKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGSGGRPGFGRGAGGERDRLVAAFASTPTLQPWCAFFLVLLSAENIIPEKNRREICKYLFKEGVCYAKKDFNMPKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGSGGRPGFGRGAGGFGAPTSSNLS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0707 379 MobiDBLite consensus disorder prediction 97 169 - -
Lele50g0707 379 MobiDBLite consensus disorder prediction 116 132 - -
Lele50g0707 379 MobiDBLite consensus disorder prediction 313 329 - -
Lele50g0707 379 FunFam 40S ribosomal protein S10 1 108 - -
Lele50g0707 379 Gene3D - 1 108 IPR036388 -
Lele50g0707 379 Gene3D - 203 305 IPR036388 -
Lele50g0707 379 MobiDBLite consensus disorder prediction 294 379 - -
Lele50g0707 379 FunFam 40S ribosomal protein S10 202 305 - -
Lele50g0707 379 PANTHER 40S RIBOSOMAL PROTEIN S10 203 373 IPR037447 -
Lele50g0707 379 Pfam Plectin/S10 domain 3 98 IPR005326 -
Lele50g0707 379 Pfam Plectin/S10 domain 204 295 IPR005326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0707 Lele-ChrLele50 4351681 4356715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0707 203 378 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 76.271 6.66e-73 223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0707 50 4351681 4356715 Lele51g0692 51 4185684 4187313 hybridization
Lele50g0707 50 4351681 4356715 Lele52g0699 52 4405123 4408232 hybridization