Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0689 ATGGGCGGTTGCTGTTGTTGTTCTTCCAAAGAAACTGAACTGAGTGATCCCCCACCGTACTTCTATCACCCAAGAGCATTGGAGGAGCGTGTTCCTCTATCATCTAATCATGGTTCTGCCTCTGCTTTCTCCAGAGGGCACCTAGTTGATACTAATCTTGAAACTTCAAGTCCTGACACTTATAGACCACCACCTGCTCCTGTTCCTTACAGCAGCGTTACTTTGGTTGTCCCTCAAACTCCCCCCGGGGTTCATGAAATTAATGATAATAAGACTAATGCATCCCTTCAATCTACAAATCCTAATTCAGTTCAAGAATTAGTTACTAGTGATGGTCATGGAAATTTGACCAAGTTGGAAGAGCAGAAGGAACTAGAAAGTAAAGTTCAGGGTGATTTAGAACTGGACTCAGCTAAGGATTCAGAAATTGAACTTCAAAAGCTAGAAGAACCTGTCATTTTAGCCGAAGAGGAGGATGTATGCCCTATCTGTTTGGAAGAGTATGATGCCGAGAATCCAAAACTCAACACAAAATGTGATCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGGGAAAACTGTCCTGTGTGTGATAAGGATATGGTTTTCGATTCTCCAATTGATTAA 639 0.4178 MGGCCCCSSKETELSDPPPYFYHPRALEERVPLSSNHGSASAFSRGHLVDTNLETSSPDTYRPPPAPVPYSSVTLVVPQTPPGVHEINDNKTNASLQSTNPNSVQELVTSDGHGNLTKLEEQKELESKVQGDLELDSAKDSEIELQKLEEPVILAEEEDVCPICLEEYDAENPKLNTKCDHHFHLACILEWMERRENCPVCDKDMVFDSPID 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0689 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Lele50g0689 212 FunFam Putative E3 ubiquitin-protein ligase RHB1A 138 206 - -
Lele50g0689 212 MobiDBLite consensus disorder prediction 35 64 - -
Lele50g0689 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 38 209 - -
Lele50g0689 212 Pfam Ring finger domain 160 201 IPR001841 -
Lele50g0689 212 SMART ring_2 161 201 IPR001841 -
Lele50g0689 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 208 IPR013083 -
Lele50g0689 212 SUPERFAMILY RING/U-box 154 208 - -
Lele50g0689 212 MobiDBLite consensus disorder prediction 35 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0689 Lele-ChrLele50 4256955 4258679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0689 1 212 C3H Transcription Factor Family AT5G41350 53.704 1.26e-67 205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0689 50 4256955 4258679 Lele51g0676 51 4102540 4104567 hybridization
Lele50g0689 50 4256955 4258679 Lele52g0680 52 4306502 4309001 hybridization