Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0678 ATGGACACCAAGGAAGATGTGAGGGTGGGAGCAAACAAGTTCTCAGAGAGGCAGCCGTTGGGAACGGCGGCTCAGGGAGACAAGGACTACAAGGAGCCACCACCGGCACCATTGTTTGAGCCAGGTGAGCTCCAATCATGGTCATTCTACAGAGCCGGCATTGCAGAGTTCGTGGCCACCTTCTTGTTCCTCTACATCACCATTTTGACTGTCATGGGCGTCAAGAATTCACCCAAGTGTGCCTCTGTTGGCATCCAAGGCATTGCTTGGGCCTTTGGTGGTATGATCTTTGCTCTTGTCTACTGCACTGCCGGGATCTCAGGTGGACACATAAACCCAGCAGTCACCTTTGGTCTGTTCTTGGCGAGGAAGCTTTCGCTTACAAGAGCACTGTTCTACATAGTGATGCAGTGTCTTGGAGCCATATGTGGTGCTGGTGTTGTGAAGGGTTTTGAGGGTACTCCACGGTATCAGTTGAACAATGGTGGGGCAAATATGGTAAGCCATGGATACACCAAGGGCGATGCTCTTGGAGCTGAGATTGTTGGAACCTTCGTCCTTGTCTACACTGTGTTCTCTGCCACTGATGCTAAGAGAAACGCCAGAGACTCTCACGTTCCTGTTTTGGCTCCTCTTCCGATCGGATTTGCGGTGTTCTTGGTGCACTTGGCAACTATTCCCATCACAGGAACAAGTATCAACCCAGCCAGAAGTTTGGGTGCTGCCATCATCTTCAACAGGGACGCTGCTTGGGATGATCATTGGATATTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCTGCTTTATATCACCAGATAGTCATTCGAGCAATTCCTTTTAAGACTAGGGCTTGA 858 0.5035 MDTKEDVRVGANKFSERQPLGTAAQGDKDYKEPPPAPLFEPGELQSWSFYRAGIAEFVATFLFLYITILTVMGVKNSPKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFEGTPRYQLNNGGANMVSHGYTKGDALGAEIVGTFVLVYTVFSATDAKRNARDSHVPVLAPLPIGFAVFLVHLATIPITGTSINPARSLGAAIIFNRDAAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKTRA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0678 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 280 IPR034294 -
Lele50g0678 285 SUPERFAMILY Aquaporin-like 43 277 IPR023271 -
Lele50g0678 285 FunFam Probable aquaporin PIP1-2 36 285 - -
Lele50g0678 285 CDD MIP 51 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g0678 285 MobiDBLite consensus disorder prediction 1 32 - -
Lele50g0678 285 Pfam Major intrinsic protein 43 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g0678 285 Gene3D Glycerol uptake facilitator protein. 36 283 IPR023271 -
Lele50g0678 285 TIGRFAM MIP: MIP family channel proteins 55 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g0678 285 ProSitePatterns MIP family signature. 110 118 IPR022357 -
Lele50g0678 285 PRINTS Major intrinsic protein family signature 92 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g0678 285 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g0678 285 PRINTS Major intrinsic protein family signature 179 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g0678 285 PRINTS Major intrinsic protein family signature 215 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g0678 285 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele50g0678 285 PRINTS Major intrinsic protein family signature 129 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0678 Lele-ChrLele50 4179657 4181124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0678 4 285 Major Intrinsic Protein MIP AT3G61430 86.572 1.59e-173 479