Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0666 ATGTATGCTAGGTTTAGCATGGGTTGTGAGTTTTCCAAGTTCTCAGCTTGCTGCTGGGGAACAGAGCAAAATGGTCCAAAAACCCACATTGATGAAAACAAAGAGGAGCATGAAGTTAATAATTTGCCGCCATTTCGTCAATACACAATCGATCAACTTAGGATGGCCACATCTGGATTTGCAGTAGAAAATATAGTTTCTGAGCATGAAGATAAGGCTCCAAATGTGGTCTATAAAGGAAAACTTGAAAATCAAATGCAAATTGCTGTAAAACGATTTAATAGATTAGCCTGGCCTGATGCCCAGCAGTTTTTGAAATTTCTTGTTTGTTCACATTGTGGCCCATTCGGTTATGAAAGGTTACTTGTTGCAGAATACATGCCTAATGATACTTTGGCAAAACACTTGTTCCACTGGGAAACTCAACCTATGAAATGGGCAATGCGACTTCAAGTTGCTTTATACCTTGCCCAAGCTTTAGAATACTGCACCAACAGAGGACGTGATCTATATCATGATCTCAATGCTTACAGAGTTCTCTTTGATATTGAAGGCAATCCTAGACTTTCATGCTTTGGTTTGATGAAAAACAGTCGAGATGGGAAAATTTATAGTACAAATCTGGCATTTGCTCCACCTGAGTATCTCAGAACAGGTACAGTTACTCCAGAAACTGTAACATATAGTTTTGGCACCCTTTTGCTTGACCTTGTCAGTGGAAAACATATCCCTCCAAGCCATGCATTTGACCTGGTTCGGGGCAAAAACCTTCAGATGCTGACAGACTCTTGTTTAGAAGGACAATTTTCAGTTTATGAGGGAACTGAGTTATTGCATTTAGTGTCACAGTGTTTACAACCTGAACCACAAGAGCGTCCTAATCTCAAGTTATTGGTCACCGCTTTAATACCCTTACAAAAGGCGTTCAAGGTTCCTTCTCATGTGCTTATGGGTATTCCGCATGGTGGTTGTGCTTTACCTCTGCCACCACTCAGTGAAGCTTGTCTTAAAATGGACTTGACTGCTATACATGAGATCATAGAAAAGATCGGGTATAAAGATGATGAAGGTGTTGCAACTGAGCTTTCATTTGGAATTTGGACCAACCAAATGCAAGAAACATTGAACTTGAAGAATAAGGGTGATGCTGCATTTCGACGCAAGGACTTCAAAGCTGCAATTGATAACTACACACAGTTCTCTGAAGTCGGAACCATGATTTCTCCGACAGTTTATGCACGCCGAAGTCTATCTTATCTCATGAATGATATGCCTGAGGAAGCACTTGACGATGCATTGCAGGCACAAGCAATATCCCCTCTCTGGTACATTGCATTCTATTTGCAAGCTGCTGCTCTTTTTGCACTGGGCAGGGAAAATGAGGCCCATGTGGCACTTAAAGAGGGTTCTGCACTTCATAATAAAAAGAATACAAATTAG 1440 0.409 MYARFSMGCEFSKFSACCWGTEQNGPKTHIDENKEEHEVNNLPPFRQYTIDQLRMATSGFAVENIVSEHEDKAPNVVYKGKLENQMQIAVKRFNRLAWPDAQQFLKFLVCSHCGPFGYERLLVAEYMPNDTLAKHLFHWETQPMKWAMRLQVALYLAQALEYCTNRGRDLYHDLNAYRVLFDIEGNPRLSCFGLMKNSRDGKIYSTNLAFAPPEYLRTGTVTPETVTYSFGTLLLDLVSGKHIPPSHAFDLVRGKNLQMLTDSCLEGQFSVYEGTELLHLVSQCLQPEPQERPNLKLLVTALIPLQKAFKVPSHVLMGIPHGGCALPLPPLSEACLKMDLTAIHEIIEKIGYKDDEGVATELSFGIWTNQMQETLNLKNKGDAAFRRKDFKAAIDNYTQFSEVGTMISPTVYARRSLSYLMNDMPEEALDDALQAQAISPLWYIAFYLQAAALFALGRENEAHVALKEGSALHNKKNTN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0666 479 SUPERFAMILY TPR-like 374 473 IPR011990 GO:0005515
Lele50g0666 479 FunFam probable serine/threonine-protein kinase At4g35230 372 479 - -
Lele50g0666 479 ProSiteProfiles Protein kinase domain profile. 1 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g0666 479 SUPERFAMILY Protein kinase-like (PK-like) 37 311 IPR011009 -
Lele50g0666 479 Gene3D Phosphorylase Kinase; domain 1 33 112 - -
Lele50g0666 479 Gene3D Tetratricopeptide repeat domain 368 479 IPR011990 GO:0005515
Lele50g0666 479 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 27 477 IPR045845 GO:0004672|GO:0009742
Lele50g0666 479 Gene3D Transferase(Phosphotransferase) domain 1 128 319 - -
Lele50g0666 479 FunFam probable serine/threonine-protein kinase At5g41260 128 319 - -
Lele50g0666 479 Pfam Protein tyrosine and serine/threonine kinase 119 301 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0666 Lele-ChrLele50 4085196 4090361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0666 21 302 Glycoside Hydrolase AT3G07070 31.804 1.63e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lele50g0666 PK_Tyr_Ser-Thr 4.4e-14 CL0016