Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0659 ATGGCGTCGAAGCTCCTAGCTTTGTCCTGCATTCGCAGTGGAGGATGGGACCGGCTATCGATCCGATCTCATTACCCGTCGATGCCGACGTACCCAAAGGGCGTGACGGCTGACGAGGGGAGCAGCGTGGAGGGTTCAGAAGCCAAGGTCCTTTTCTCCGTCGTCGGAATGACATGCTCTGCCTGCGCTGGCTCCGTTGAGAAAGCGATCAAGCGCCTACCTGGAATTCGTGAGGCCGTTGTGGATGTTCTCAATAATCGAGCTTTTGTTTTGTTCTACCCCACCTTCGTTAACGAGGAGACTATTCGCGAGGCCATTGAAGATGCTGGGTTTGAAGCTACATTGCTAAGAGATGAGATGAATAAGAGATCCGTTCATGCATGTCGCATAACCGTAACTGGAATGACTTGCACTTCTTGCTCCTCCACTGTTGAATCAGCTCTGCAACTAATTCCAGGTGTGCTGAAAGCTCAAGTGGCTTTGGCAACTAATGAAGCGGAAGTACACTACAATCCAAACATTGTCAATCACAATCAAATTCTGGAAGCCATAGCAGACACTGGATTTGAAGCCACACTTATCAGTTCAGGTGAAGACACGAGCAAAGTAGACCTCCAAGTTAAGGGTGTACAAACTGAAGATTCCATGAGAATCGTTGAAACTTCTCTTCAAGCTCTTCCAGGTGTCCAGGATGTAGAATTATATCCTGATCTGAACAAAATATCAGTTTCTTTCAAACCAGACATGACAGGACCTAGGAATTTTATCAACATAATTGAAAGAATTGGGTCCGGGAGTTTCGAGGCTAAATTATTTCCTCAGCAAGGAGAACGAAGAGATACTCATAGACGGGGGGAAATTAAACAATATTATAGGTCCTTCTTATGGAGTTTGGTTTTTACTGTTCCAATCTTTTTAACTTCTATGGTTCTTATGTATATCCCGGGAATTAAGCATGGACTAGATACCAAAGTTGTGAATATGCTTACAGTGGGACAAATTTTAAGATGGGTGCTTTCCACGCCAGTACAGTTCATAATTGGCAGGAGATTCTACTCTGGATCTTACAAAGCATTACGCCATGGTTCTGCCAACATGGACGTCTTGATTGCCTTGGGAACAAATGCGGCATACTTCTACTCAGTGTACTCTGTACTGAGAGCTGCTAGCTCCCCACATTTCGAGGGGACCGATTTCTTTGAGACTAGCTCAATGCTTATTTCATTTATTCTGCTGGGAAAGTATCTGGAAGTCTTCACCAAGGGGAAGACATCTGACGCTATTGCCAAGCTCATGAACTTGACCCCGGATACAGCTATATTGCTTACCCTGGACAAGGAAGGGAATGTTATTAATGAAGAAGAGATTGACAGTCGATTGATTCAAAAGAATGATCTGATTAAAATTATTCCCGGTGCAAAAGTAGCTTCTGATGGATATGTCGTCGGGGGCCAGAGCCACGTGAATGAGAGCATGATAACTGGAGAGGCACGTCCTGTCGCAAAGAGGAAGGGTGATCCTGTTATTGGAGGAACTGTGAATGAGAATGGAGTGTTGCATGTCAGGGCAACAAGAGTTGGATCAGAGAGTGCTCTTTCACAGATTGTTCGACTTGTTGAATCAGCACAGTTGGCCAAGGCTCCTGTGCAGAAGTTTGCTGATCGCATTTCGAAATTCTTTGTGCCTTTGGTCATTTTAATCTCTTTCACCACTTTTCTTGCATGGTTCTTAGCCGGAAGGTTCCATGCTTACCCGAAGTCTTGGATACCATCTTCCATGGATAGTTTTGAGCTTGCTTTACAGTTTGGCATCTCTGTCATGGTCATAGCTTGCCCTTGTGCTCTTGGTCTAGCCACACCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAAGGCGTACTAATCAAAGGAGGGCAAGCACTAGAAAGTACGCATAAGGTGAAATGCATTGTCTTCGACAAGACTGGTACTCTCACCATTGGGAAGCCTGTGGTTGTAAACACTAAACTATTGATTAATATGGTACTCCAAGAATTCTATGAACTTGTAGCAGGAGCTGAGGTGAATAGTGAGCATCCATTGGCCAAGGCTATTGTCGAGTATGCCAAGAAATTTAAAGATGAAGAGAACCCTGCTTGGCCTGAAACACGAGATTTTGTCTCCATACCTGGCCATGGCGTGAAGGCCATTGTTCGAAACAAGGAAATTATCGTGGGTAACAAGAGCTTGCTGGCTGACCATAATATTGCTGTTCCTGTGGAGGCAGAAGATATCCTTGCTGAGGCTGAGGGGATGGCTCAAACTGGAATTTTGGTATCGATTAATGGGGAAGTGGCTGGAGTTGTAGCAGTATCTGATCCATTGAAACCGGGTGCTCAAGAAGTGATCTCAATTCTCAAGTCCATGAACATCAAAAGCATCCTAGTAACTGGTGACAACCGGGGAACTGCTGATTCTATAGCAAGGGAAGTTGGGATTGAAGAAGTCTTTGCTGAGACTAAACCAGAGCAGAAAGCAGAGAAAGTGAAGGAGTTGCAGGCTGCTGGATATACAGTGGCAATGGTTGGGGATGGTATCAATGATTCACCAGCACTTGTAGCAGCAAACGTGGGAATGGCAATTGGTGCAGGCACAGACATAGCTATTGAGGCTGCAGACATTGTTCTGATGAAGAGCAACTTGGAGGATGTGATAACTGCCATTGATCTTTCCAGAAGAACATTTTTCCATATTCGTCTCAATTACATTTGGGCTTTGGGTTATAATCTTCTTGGCATTCCAATAGCTGCTGGAGTTCTTTTCCCTTTTACAGGACTCAGATTGCCACCTTGGATTGCTGGGGCGGCAATGGCAGCCTCATCTGTGAGTGTTGTTTGTTGTTCTCTGTTGCTGAAATATTACAGGAGGCCTAAGAAACTGGACAAGCTTGAGATTCGGGGCATTAGGATAGAATGA 2961 0.4505 MASKLLALSCIRSGGWDRLSIRSHYPSMPTYPKGVTADEGSSVEGSEAKVLFSVVGMTCSACAGSVEKAIKRLPGIREAVVDVLNNRAFVLFYPTFVNEETIREAIEDAGFEATLLRDEMNKRSVHACRITVTGMTCTSCSSTVESALQLIPGVLKAQVALATNEAEVHYNPNIVNHNQILEAIADTGFEATLISSGEDTSKVDLQVKGVQTEDSMRIVETSLQALPGVQDVELYPDLNKISVSFKPDMTGPRNFINIIERIGSGSFEAKLFPQQGERRDTHRRGEIKQYYRSFLWSLVFTVPIFLTSMVLMYIPGIKHGLDTKVVNMLTVGQILRWVLSTPVQFIIGRRFYSGSYKALRHGSANMDVLIALGTNAAYFYSVYSVLRAASSPHFEGTDFFETSSMLISFILLGKYLEVFTKGKTSDAIAKLMNLTPDTAILLTLDKEGNVINEEEIDSRLIQKNDLIKIIPGAKVASDGYVVGGQSHVNESMITGEARPVAKRKGDPVIGGTVNENGVLHVRATRVGSESALSQIVRLVESAQLAKAPVQKFADRISKFFVPLVILISFTTFLAWFLAGRFHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVKCIVFDKTGTLTIGKPVVVNTKLLINMVLQEFYELVAGAEVNSEHPLAKAIVEYAKKFKDEENPAWPETRDFVSIPGHGVKAIVRNKEIIVGNKSLLADHNIAVPVEAEDILAEAEGMAQTGILVSINGEVAGVVAVSDPLKPGAQEVISILKSMNIKSILVTGDNRGTADSIAREVGIEEVFAETKPEQKAEKVKELQAAGYTVAMVGDGINDSPALVAANVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRRTFFHIRLNYIWALGYNLLGIPIAAGVLFPFTGLRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPKKLDKLEIRGIRIE 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0659 986 CDD HMA 52 114 IPR006121 GO:0046872
Lele50g0659 986 SUPERFAMILY HAD-like 652 963 IPR036412 -
Lele50g0659 986 SUPERFAMILY Calcium ATPase, transmembrane domain M 401 645 IPR023298 -
Lele50g0659 986 Gene3D - 620 914 IPR023214 -
Lele50g0659 986 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 366 966 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lele50g0659 986 Gene3D - 47 119 - -
Lele50g0659 986 SUPERFAMILY HMA, heavy metal-associated domain 126 197 IPR036163 GO:0046872
Lele50g0659 986 TIGRFAM TIGR00003: copper ion binding protein 130 191 IPR006122 GO:0005507
Lele50g0659 986 TIGRFAM TIGR00003: copper ion binding protein 49 113 IPR006122 GO:0005507
Lele50g0659 986 FunFam Copper-transporting ATPase HMA5 47 118 - -
Lele50g0659 986 SFLD p-type atpase 635 909 IPR044492 -
Lele50g0659 986 ProSiteProfiles Heavy-metal-associated domain profile. 49 115 IPR006121 GO:0046872
Lele50g0659 986 Pfam haloacid dehalogenase-like hydrolase 649 871 - -
Lele50g0659 986 CDD P-type_ATPase_Cu-like 292 967 - -
Lele50g0659 986 Pfam Heavy-metal-associated domain 130 190 IPR006121 GO:0046872
Lele50g0659 986 Pfam Heavy-metal-associated domain 52 112 IPR006121 GO:0046872
Lele50g0659 986 Gene3D - 421 543 - -
Lele50g0659 986 SUPERFAMILY HMA, heavy metal-associated domain 45 117 IPR036163 GO:0046872
Lele50g0659 986 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 984 - -
Lele50g0659 986 SUPERFAMILY Calcium ATPase, transduction domain A 453 539 IPR008250 -
Lele50g0659 986 SFLD C1.7: P-type atpase like 635 909 - -
Lele50g0659 986 ProSiteProfiles Heavy-metal-associated domain profile. 127 193 IPR006121 GO:0046872
Lele50g0659 986 PRINTS Copper-transporting ATPase 1 signature 150 171 - -
Lele50g0659 986 PRINTS Copper-transporting ATPase 1 signature 49 74 - -
Lele50g0659 986 PRINTS Copper-transporting ATPase 1 signature 104 124 - -
Lele50g0659 986 PRINTS Copper-transporting ATPase 1 signature 75 98 - -
Lele50g0659 986 ProSitePatterns Heavy-metal-associated domain. 54 83 IPR017969 GO:0046872
Lele50g0659 986 ProSitePatterns Heavy-metal-associated domain. 132 161 IPR017969 GO:0046872
Lele50g0659 986 Gene3D - 201 263 - -
Lele50g0659 986 ProSitePatterns E1-E2 ATPases phosphorylation site. 655 661 IPR018303 -
Lele50g0659 986 Gene3D - 737 788 IPR023299 GO:0000166
Lele50g0659 986 Gene3D - 660 736 IPR023299 GO:0000166
Lele50g0659 986 SUPERFAMILY HMA, heavy metal-associated domain 197 265 IPR036163 GO:0046872
Lele50g0659 986 ProSiteProfiles Heavy-metal-associated domain profile. 202 268 IPR006121 GO:0046872
Lele50g0659 986 FunFam Copper-transporting ATPase 1, putative 421 543 - -
Lele50g0659 986 FunFam Copper-transporting ATPase HMA5 125 196 - -
Lele50g0659 986 Pfam E1-E2 ATPase 446 631 - -
Lele50g0659 986 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 406 935 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele50g0659 986 CDD HMA 130 192 IPR006121 GO:0046872
Lele50g0659 986 Gene3D - 126 196 - -
Lele50g0659 986 PRINTS P-type cation-transporting ATPase superfamily signature 880 892 - -
Lele50g0659 986 PRINTS P-type cation-transporting ATPase superfamily signature 804 814 - -
Lele50g0659 986 PRINTS P-type cation-transporting ATPase superfamily signature 489 503 - -
Lele50g0659 986 PRINTS P-type cation-transporting ATPase superfamily signature 857 876 - -
Lele50g0659 986 PRINTS P-type cation-transporting ATPase superfamily signature 653 667 - -
Lele50g0659 986 PRINTS P-type cation-transporting ATPase superfamily signature 782 793 - -
Lele50g0659 986 FunFam Probable copper-transporting ATPase HMA5 767 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0659 Lele-ChrLele50 4056100 4060458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0659 1 986 Primary Pumps ATPases AT1G63440 73.996 0.0 1502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0659 50 4056100 4060458 Lele51g0651 51 3929830 3933889 hybridization
Lele50g0659 50 4056100 4060458 Lele52g0652 52 4130106 4134503 hybridization