Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0649 ATGCCTCAGGGAACCCTTGAAGTCCTTCTGGTTAGTGCTAAGGGTCTCGAGAATACCGATTTTCTCAGCAACATGGATCCTTATGTGATCCTCACCTGCCGCACTCAGGAGCAGAAAAGCAGCGTAGCATCAGGGAAAGGATCTGATCCGGAATGGAATGAAACTTTTGTTTTCAACTTGACCGGCGACGTTTCGGAACTCACATTGAAGATATTGGACAGTGATGTTGGCACAAATGATGATAACGTAGGAGAAGCAACCATCCCACTAGACGCTTTGTTCACTGAAGGAAGCATCCCTCCTACGGCATACAATGTTGTGAAGGATGAGGAGTATCGCGGAGAGATTAAAGTTGGCCTCACTTTTACCCCCGAGGAGCGAAGCAGCGAATATCTGCAAGAGGAAAGCTTAGGTGGGTGGAGGGAATCTAGCAGAGACTATTAA 444 0.4752 MPQGTLEVLLVSAKGLENTDFLSNMDPYVILTCRTQEQKSSVASGKGSDPEWNETFVFNLTGDVSELTLKILDSDVGTNDDNVGEATIPLDALFTEGSIPPTAYNVVKDEEYRGEIKVGLTFTPEERSSEYLQEESLGGWRESSRDY 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0649 147 PANTHER C2 DOMAIN-CONTAINING 1 131 - -
Lele50g0649 147 SMART C2_3c 5 102 IPR000008 -
Lele50g0649 147 Gene3D C2 domain 2 125 IPR035892 -
Lele50g0649 147 MobiDBLite consensus disorder prediction 125 147 - -
Lele50g0649 147 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 125 IPR035892 -
Lele50g0649 147 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Lele50g0649 147 Pfam C2 domain 4 96 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0649 Lele-ChrLele50 3980235 3982352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0649 4 119 C2H2 Transcription Factor Family AT4G21160 29.310 4.57e-09 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0649 50 3980235 3982352 Lele52g0641 52 4062112 4066650 hybridization