Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0645 ATGAAAGTCCCACGGATAAGCGTCACAATTGCAATTTGCAAGCAACAAGAAAAAGCGGATAAACTTTTGCTGTTTTCCCATAAGAGCGTCCGGATCCGGATCCGGATCCGGGTATTACTTGGTCACCTTCAATTCGCCGTCTCAAGTCTCAACCCTTCGAAGTTGAGTTCGTGTTCCCGTGTTCTAAGACGATTTATCATTGCATCCTCGATTTCACGTAAAGCGCTTGATTTCCTCGCTGATTTGAAGCTTAGCTTGTCGCCCCACTTGAAGGCTACGCAAGAGATGGCAACGACTACGTCACCAAATCGTTACTCCGACGACATAGTCGATTCGACACCGTTCATAGCAAATTCAGGTGGGTCTTCCGATGAATTCAATTCTGGCCGTCGATTTGTTCGCAGGCAGAGCCTTCGCCAAGCTGCTCGGTTCCTGAGGCAGGCCAGTGGCCGTAGGATGATGCGCGAGCCATCGATGCTTGTCAGAGAGACTGCAGCCGAGCAATTGGAGGAGAGACAGGGCGATTGGGCTTATTCTAAGCCCGTTGTTATCCTTGATATTATTTGGAACTTCGTCTTTGTTGTCGCGGCTGCTACGGTTTTAATTTTGAGTCGAAGCGAGTCGCCGAGCATGCCTTTGAGGCTGTGGATTGTGGGATACGCTCTGCAATGCATCCTTCACGTGTTCTGCGTTTGCGTTGAATATAAGAGACGGAGGCGGCTCCGGCAGCGCCAGTTTCCACTATCGTTGGACGCAGTGAACGGAAGGGCAGGCAGCAGTGGGAATCTGAGTCTGGGTTCAAGGGATGGTTCTGGGCACTATGTGTCATTGGCGGAATTCAACGAAGAGGGTACAAGTGTAGCGAAGCATTTGGAGTCAGCGAACACAATGTTTTCATTTATCTGGTGGATCGTTGGATTTTACTGGGTATCAGCTGGTGCTCAAAATTTAGTCCTTGATTCTCCATTTTTATACTGGTTATGTATAGCTTTCCTGGGTTTTGATGTTTTCTTTGTTGTATTCTGTGTCGCGCTGGCATTCATCATCGGTATTGCTGTATGCTGTTGCCTTCCATGTATTATTGCACTTCTATATGCCGTTGCAGACCAGGAAGGAGCATCAAAAGAAGACATTGAGCAGCTGGCTAAATTTAAATTCCGAAGAATTGACAATGATGAGAAACTTGCTGGTAACGCACAAGAACCAGTTGGTGGAATAATGACTGAGTGCGGCACTGATTCACCGAATGAACACATTCTTTCTGAGGAGGATGCCGAATGCTGCATCTGTCTATCTGCTTATGATGATGGTGCTGACCTCAGAGAACTTCCTTGCGGTCACCATTTTCACTGTGCCTGTGTGGACAAGTGGCTGTACATCAATGCTACTTGTCCTCTCTGCAAGTATAACATCTTGAAGAGAATCAACCAAGAGGAAGCATAG 1443 0.474 MKVPRISVTIAICKQQEKADKLLLFSHKSVRIRIRIRVLLGHLQFAVSSLNPSKLSSCSRVLRRFIIASSISRKALDFLADLKLSLSPHLKATQEMATTTSPNRYSDDIVDSTPFIANSGGSSDEFNSGRRFVRRQSLRQAARFLRQASGRRMMREPSMLVRETAAEQLEERQGDWAYSKPVVILDIIWNFVFVVAAATVLILSRSESPSMPLRLWIVGYALQCILHVFCVCVEYKRRRRLRQRQFPLSLDAVNGRAGSSGNLSLGSRDGSGHYVSLAEFNEEGTSVAKHLESANTMFSFIWWIVGFYWVSAGAQNLVLDSPFLYWLCIAFLGFDVFFVVFCVALAFIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLAKFKFRRIDNDEKLAGNAQEPVGGIMTECGTDSPNEHILSEEDAECCICLSAYDDGADLRELPCGHHFHCACVDKWLYINATCPLCKYNILKRINQEEA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0645 480 SMART ring_2 427 467 IPR001841 -
Lele50g0645 480 ProSiteProfiles Zinc finger RING-type profile. 427 468 IPR001841 -
Lele50g0645 480 PANTHER TARGET OF ERK KINASE MPK-1 147 472 - -
Lele50g0645 480 Pfam Ring finger domain 426 468 IPR001841 -
Lele50g0645 480 CDD RING-H2_RNF111_like 426 470 - -
Lele50g0645 480 SUPERFAMILY RING/U-box 418 474 - -
Lele50g0645 480 Coils Coil 475 480 - -
Lele50g0645 480 FunFam E3 ubiquitin-protein ligase At1g12760 413 478 - -
Lele50g0645 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 477 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0645 Lele-ChrLele50 3959562 3962992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0645 117 478 C3H Transcription Factor Family AT1G68070 48.901 2.53e-114 338