Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0624 ATGGTGAGAGGAAAAACTCAGATGAAGCGCATAGAAAATGATACAAGCAGGCAAGTGACCTTCTCGAAGCGAAGAAGCGGGCTGCTTAAGAAGGCTTTTGAGCTTTCTGTGCTATGCGATGCTGAAGTTGCACTCATTATCTTCTCGCCCAGAGGCAGGGTTTCTGAGTACTCCAGTTCTAGTGTGAATAAAACGGTTGAACGCTATCTAAGGAAAGTCAAGGACCGTGGTCTTGCCACCAGAGGAAGCCAAGCAAATACGCAGCAAGGTACTATTAACATGACTAAGAAGATAGAGCATCTTGAAGTTCTTCGAAGGAAGCTTCTGGGAGATGGTTTGGATGCTTGTTCTATTGACGAGTTACGTCAGATAGAGAACCAGCTTGAACAAAGTTTAGCCAAAATTAGGGCAAGAAAGAATCAACTGTTCAAGGAACAGAACGAGGCGTTAAGAGAAGAGGAAAAGCACTTGCTGGAAATAAATAAAGACTTACGGGAGCAGTTGTCACGGTGGGGCGATGAACTACAGCAGCGGAATCCGGCTGAAGAGCAGGATGATGGTGAGCACTTGAATGAAGGGACGGATGGCGTGGAGACAGAGCTGGTTATAGGACCACCGGAGAGACGAATGCCTTGA 636 0.4654 MVRGKTQMKRIENDTSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGRVSEYSSSSVNKTVERYLRKVKDRGLATRGSQANTQQGTINMTKKIEHLEVLRRKLLGDGLDACSIDELRQIENQLEQSLAKIRARKNQLFKEQNEALREEEKHLLEINKDLREQLSRWGDELQQRNPAEEQDDGEHLNEGTDGVETELVIGPPERRMP 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0624 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele50g0624 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele50g0624 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele50g0624 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele50g0624 211 Coils Coil 118 167 - -
Lele50g0624 211 MobiDBLite consensus disorder prediction 172 195 - -
Lele50g0624 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele50g0624 211 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Lele50g0624 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Lele50g0624 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele50g0624 211 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Lele50g0624 211 MobiDBLite consensus disorder prediction 172 211 - -
Lele50g0624 211 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Lele50g0624 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele50g0624 211 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Lele50g0624 211 ProSiteProfiles K-box domain profile. 84 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele50g0624 211 Pfam K-box region 84 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0624 Lele-ChrLele50 3794475 3798361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0624 1 209 MADS-box Gene Family AT4G22950 55.660 8.72e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele50g0624 K-box 1.1e-21 No_clan