Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0597 ATGCCCAGCTCCTCAGTTGTTAAGCTTTTAAATATGGAAGCCAGGGATGGAATTAGCAGTGCAGTCACGGTGGTCGGATCAGATGATCCGTCGGAGTACCATGTAGCTCCAAGGAACGAGAACCCGGCAACCACTGTCGGATCAACAACGCCTACGCCGGCTCCGGCGACTCAAGGGAGTGCTCCTCCGCCGCAGACGGCAGCGGCAGGAGGTACGCTGGGAACATTGACGATGCCAGGGAAGAAGAAAAGAGGCCGACCGAGAAAGTACGGACCAGACGGGTCGGTGACCATGGCTCTATCTCCGAAACCAATATCTTCTTCGGCTCCACCCCAAGTCATCGATTTCTCCGCAGATAAGCGCGGGAAAGTTCGTCCAGTTAGTTCGGTCAGCAAATCCAAATTCGAGGTCGAGAATATAGGATGTGGGACCTGTGGGTTAGATGCCCTTATTGAGGTATTTGGTATATGTGGTAGTCCTCAAAAGTTACTTAGCTTTGTGGTGTGGGTGGGTATGATATTGGAATCTTCTTGTTACGGCTGTGATTTGGCACTTGAAAACTTTTACTCAAAGCCAAATGGTGAATGGGTTGCATGCTCCGTAGGTGCTAATTTTACACCCCATATACTCACTGTTAATGCTGGGGAGGACGTTACTATGAAGATAATATCATTTTCTCAGCAAGGACCTCGAGCTATATGTATTCTTTCTGCAAATGGTGTCATATCAAGTGTCACGCTTCGTCAACCTGATTCTTCTGGCGGCACATTGACCTATGAGGGACGTTTTGAAATTCTGTCGTTGTCTGGGTCCTTCATGCCAAGTGAAAGTGGGGGAACACGAAGCAGATCTGGTGGTATGAGCGTTTCGTTGGCAAGTCCAGATGGTCGTGTCGTAGGTGGTGGAGTGGCAGGTCTATTAGTAGCAGCAAGTCCTGTGCAGGTAGTGGTAGGAAGCTTTCTGGCTGGAAACCAGCATGAGCAAAAGCCAAAGAAACAGAAAATTGAGGTCATATCCACAGCCATACCCACTTCTGTTGTTCCCTTGTCTAGTGTTGTTACCGATCCGGTCCCTCTCCTCACCTCTTCATCTTCCTTCCGCGGCGATAGTTGGTCTGCAATCCCGGCAGAATACAGGAACAACACCACCACCACCACCAATGCCAATGCCAACGCCAACAATAATAATAAGTCAACTGATATTAATGTGTCACCGTCTGGAGGGTAA 1227 0.4914 MPSSSVVKLLNMEARDGISSAVTVVGSDDPSEYHVAPRNENPATTVGSTTPTPAPATQGSAPPPQTAAAGGTLGTLTMPGKKKRGRPRKYGPDGSVTMALSPKPISSSAPPQVIDFSADKRGKVRPVSSVSKSKFEVENIGCGTCGLDALIEVFGICGSPQKLLSFVVWVGMILESSCYGCDLALENFYSKPNGEWVACSVGANFTPHILTVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPKKQKIEVISTAIPTSVVPLSSVVTDPVPLLTSSSSFRGDSWSAIPAEYRNNTTTTTNANANANNNNKSTDINVSPSGG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0597 408 MobiDBLite consensus disorder prediction 23 94 - -
Lele50g0597 408 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 387 IPR039605 GO:0003680
Lele50g0597 408 CDD DUF296 206 297 IPR005175 -
Lele50g0597 408 FunFam AT-hook motif nuclear-localized protein 1-like 207 337 - -
Lele50g0597 408 Gene3D - 207 340 - -
Lele50g0597 408 MobiDBLite consensus disorder prediction 41 65 - -
Lele50g0597 408 Pfam Plants and Prokaryotes Conserved (PCC) domain 207 320 IPR005175 -
Lele50g0597 408 ProSiteProfiles PPC domain profile profile. 202 341 IPR005175 -
Lele50g0597 408 MobiDBLite consensus disorder prediction 383 408 - -
Lele50g0597 408 SUPERFAMILY AF0104/ALDC/Ptd012-like 204 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0597 Lele-ChrLele50 3652490 3655590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0597 9 404 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 51.174 2.04e-111 329