LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele50g0583	ATGGGGAGGCAACCTTGCTGTGACAAACTGGGCGTGAAGAAAGGACCATGGACTGCTGAGGAAGACAAGAAACTCATTAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGAGCCGTGCCCAAGCTCGCCGGCCTCCGCCGTTGCGGTAAGAGCTGCCGCCTTCGTTGGACTAATTATCTCCGTCCAGACTTGAAGCGAGGACTTCTGACTGAAGCTGAAGAGCAGCTCGTTATCGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGATTACCTGGAAGGACAGACAATGAGATTAAGAATCACTGGAACACCCACATCAAGAAAAAGCTGCTTAAGATGGGCATTGATCCTGTTACTCATGAACCTATTAATAAACAGGCTACCTCCCAGGAAACATCTTCCCATCAGAATAATAATCCACAATCTACAGATAATAATCATCAGCTTAAGGAAAGTGAGAGGGTTCCCAGCTCCGGGGAGAATTCGAGCACATCCCCGGTTGAAAACTCTTCTTCTGGGGACGAGTCCCTTCTGTTAGACAGTATATGCAGGGATGACTCTCTAATGAACAGCTTGTGGCTTGACGAAGCGCTGGTAGATGCTTTATCGGACAGTGAACCAAAAGTTCAGAATATTACTAATAATAATGGAATGGTCATGCCATCTTGGGAGGACAACTGTGCTTGGTTTTTGGATTGTCAAGACTTTGGTATTCATGATTTTGGTTTTAGTTGCTTTCATGATAATGAATCAAATGCACTGCAAACTTTAGGAATCGAGGAGAAGGATATCATTAGCAAGCACTACTCCCAATGA	834	0.4592	MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPINKQATSQETSSHQNNNPQSTDNNHQLKESERVPSSGENSSTSPVENSSSGDESLLLDSICRDDSLMNSLWLDEALVDALSDSEPKVQNITNNNGMVMPSWEDNCAWFLDCQDFGIHDFGFSCFHDNESNALQTLGIEEKDIISKHYSQ	277

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele50g0583	277	MobiDBLite	consensus disorder prediction	132	180	-	-
	Lele50g0583	277	MobiDBLite	consensus disorder prediction	161	180	-	-
	Lele50g0583	277	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Lele50g0583	277	Pfam	Myb-like DNA-binding domain	71	111	IPR001005	-
	Lele50g0583	277	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Lele50g0583	277	Gene3D	-	12	67	-	-
	Lele50g0583	277	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Lele50g0583	277	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Lele50g0583	277	CDD	SANT	71	112	IPR001005	-
	Lele50g0583	277	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Lele50g0583	277	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Lele50g0583	277	PANTHER	F14D16.11-RELATED	1	180	-	-
	Lele50g0583	277	SMART	sant	13	63	IPR001005	-
	Lele50g0583	277	SMART	sant	66	114	IPR001005	-
	Lele50g0583	277	CDD	SANT	16	61	IPR001005	-
	Lele50g0583	277	FunFam	MYB transcription factor	70	148	-	-
	Lele50g0583	277	Gene3D	-	71	159	-	-
	Lele50g0583	277	MobiDBLite	consensus disorder prediction	132	152	-	-
	Lele50g0583	277	FunFam	MYB transcription factor	11	67	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele50g0583	Lele-ChrLele50	3555842	3557167	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele50g0583	1	249	MYB Transcription Factor Family	AT4G22680	60.526	3.27e-102	297

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele50g0583		Myb_DNA-binding	2.9e-13	CL0123