Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0580 ATGAATGCGTTCTCACACGTTCCTCCAGGCTTTCGGTTCCACCCCACAGATGAAGAACTGGTTGATTATTACCTAAGAAAAAAGAGAGCCTCCAAAAGGATTGACCTAGATGTTATTAAAGACGTGGATCTCTATAAAATTGAGCCCTGGGATCTTCAAGAACTATGCAAAATAGGAGCGGAAGAACAAAACGAGTGGTATTTCTTCAGCCACAAAGACAAGAAGTACCCAACTGGAACTCGCACGAATAGAGCCACAAAAGCAGGATTCTGGAAAGCCACAGGAAGAGACAAGGCAATCTACCGTAGGCATTGCCTCATTGGGATGCGAAAGACTCTTGTTTATTACAAGGGGCGAGCCCCAAACGGACAGAAATCTGACTGCATCATGCATGAGTACCGACTTGAAACTAATGAAAACGGAACTCCTCATGAAGAAGGTTGGGTTGTATGTAGAGTGTTCAAGAAGAAAATGACAAGCGTGCGGAGAGTGGGGGAGTACGAGTCAACATGCTGGTTTGAGGACCAAGTCTCGTTGATGCAAGAGCTTGAATCCGCAAGACCAATTTCTCATCAACCTTATGCATCTAATTACCACCACCATCATCAGTACTACGTACCTTGCAAGCAGGAACTTCATCAATTGCAATATAACGTAACCGGCCATCCCCATGAAGTTTTCCTTCAGCTTCCCCAACTTGAGAGCCCCAAAGTTCCTCACTCAGCCGCAAGTTTGAGTTGCAACAATTCAACGGTCCCTTATGCCTATGACAGCAACAACAATAATGAAAGTAGCTTGCAGCAGTCACCCAATTCACTCACTCGGGAAGACAACATACCTTGTGGAAACAATAATGATCAAGTGACTGATTGGCGAGTTCTTGATAAATTCGTGGCTTCTCAACTCAGTAGTCACCAGCAAGAAGTTTCCAAGAAAGCCACCTATTCCAATGCAGCAGTGCTCCATGTGGATGAAGCTGTCACTAAAAGGCCCGAGATTGCGCAGCAGGAATATGCCTCCACATCCACCTCCAGTTGCCAGATTGACCTGTGGAACTGA 1059 0.4551 MNAFSHVPPGFRFHPTDEELVDYYLRKKRASKRIDLDVIKDVDLYKIEPWDLQELCKIGAEEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYRRHCLIGMRKTLVYYKGRAPNGQKSDCIMHEYRLETNENGTPHEEGWVVCRVFKKKMTSVRRVGEYESTCWFEDQVSLMQELESARPISHQPYASNYHHHHQYYVPCKQELHQLQYNVTGHPHEVFLQLPQLESPKVPHSAASLSCNNSTVPYAYDSNNNNESSLQQSPNSLTREDNIPCGNNNDQVTDWRVLDKFVASQLSSHQQEVSKKATYSNAAVLHVDEAVTKRPEIAQQEYASTSTSSCQIDLWN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0580 352 MobiDBLite consensus disorder prediction 254 277 - -
Lele50g0580 352 FunFam NAC domain-containing protein 16 160 - -
Lele50g0580 352 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Lele50g0580 352 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Lele50g0580 352 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Lele50g0580 352 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Lele50g0580 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0580 Lele-ChrLele50 3531061 3532310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0580 1 350 NAC Transcription Factor Family AT1G62700 54.271 5.42e-134 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele50g0580 NAM 1.8e-34 No_clan