Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0579 ATGTCATCATCCTCTTCTACTGCCTTATCGCTGGACCACCTCCCTCCTTCCGAGCAGCTTTGTTATGTCCACTGCAACATTTGTGACACTGTCCTTGCTGTAAGTGTTCCTTGCACCAGCCTGTTCAAGACGGTGACCGTGCGATGCGGCCATTGCACCAACCTCCTGCCGGTTAACGTGAACATGCGTGGATTGCTTCTTCCTTCAGCAAACCAATTTCACCTGAGTCACTCTTTCTACTCTCCATCTCACAATCTTCTGGAGGAGATACCAAACCCATCCCCAAATTTTCTAATCAATCAGACCAACTCTTCCAATAACTTCTCTGTGCCTTCAAGGACAACAGCTGATGAGCTCCCACGCCCACCCCTCATCATCAATAGACCTCCTGAGAAGAGACAGAGAGTTCCCTCCGCCTACAACCGATTCATTAAGGAGGAGATCCAACGCATCAAGTCTATCAATCCCGACATAACCCACAGAGAAGCCTTCAGCGCAGCTGCCAAGAACTGGGCCCACTTCCCTCACATTCACTTTGGCCTCATGCCTGATCAGACCATGAAGAAGACAAATGTACGCCAGCAGGAAGGAGACGACGTTCGCATGAAAGATGGGGTTTTTGCTTCGGCAAATGTTGGTGTTTCTCCCTACTAG 654 0.4969 MSSSSSTALSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNVNMRGLLLPSANQFHLSHSFYSPSHNLLEEIPNPSPNFLINQTNSSNNFSVPSRTTADELPRPPLIINRPPEKRQRVPSAYNRFIKEEIQRIKSINPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVRQQEGDDVRMKDGVFASANVGVSPY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0579 217 MobiDBLite consensus disorder prediction 110 129 - -
Lele50g0579 217 FunFam Axial regulator YABBY 126 197 - -
Lele50g0579 217 SUPERFAMILY HMG-box 125 174 IPR036910 -
Lele50g0579 217 Gene3D High mobility group box domain 126 194 IPR036910 -
Lele50g0579 217 PANTHER PROTEIN YABBY 6-RELATED 1 193 IPR006780 GO:0007275
Lele50g0579 217 Pfam YABBY protein 16 181 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0579 Lele-ChrLele50 3521317 3523590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0579 27 215 C2C2-YABBY Transcription Factor Family AT4G00180 57.416 5.47e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele50g0579 YABBY 6.5e-70 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0972 53 19264716 19267112 Lele50g0579 50 3521317 3523590 CCT
Lele54g0951 54 15898992 15902440 Lele50g0579 50 3521317 3523590 CCT
Lele56g0486 56 3586911 3590271 Lele50g0579 50 3521317 3523590 CCT
Lele50g0579 50 3521317 3523590 Lele50g0579 50 3521317 3523590 ECH
Lele50g0579 50 3521317 3523590 Lele51g0568 51 3399193 3401445 hybridization
Lele50g0579 50 3521317 3523590 Lele52g0577 52 3606465 3608737 hybridization