Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0546 ATGGAGAGGCACAAATGCAAGCTTTGCTCTCGAACGTTCGCCAATGGCAGAGCATTAGGTGGTCACATGAAAGCTCACTTGGCCTCTCTTCCTCTTCCTCCCAAGCCCCAATCTCTGATCACTCCTTCAGCACCTTCCTTCTCTTATTCCTCTTCCGACGACGACGAAGAAAAAGTTGAAGTAGCTCCTGCTTACAACAGAGAATCCGACGACAAGGCTTTGAGTTATGGTTTGAGAGAGAATCCAAGGAAAAATTTAAGGTTCGCAGATCCTGAGTTCTCTTTTACGGTTGATGCTGGCTCCGTCGTCCAAGATAGAGAAAGCGAGACGGAGTCAAAGAATCCGACTCGCCGGCGATCCAAGCGAGCCAGAAAATCCAGCGTCGGAGCTAGTCAGAAATTTGAAGTGAACAAGGTCAAGTCAAATTTGACGGAGTCACCGACGGAGCCAGAACCGGTGAGCTCGGTTTCAGATACTTCACCGGATGAACATGTTGCTCTGTGCCTCATGATGCTTTCGAGAGACAAATGGATGAGAAACGTCGTGGAACAAGATCAAGTGGTGGAGAGATTGAAGGGAACAGAAGAGATCAAGTTGAAGAGGAAGCATCGATCTGATAACGCTAAGAAAACTTCTCGACCTTCTCGAGCACTGAAAACTCATCACAATAGCACCTTCTTCCCTGAAGAAGCAGAGACCAAAATTGCAGGTAACAATAAAATTTTCCAATGCCCATTTTGTTACAAAGTCTTCGGGACGGGGCAAGCACTCGGTGGCCACAAGAGATCCCACCTCCTACCATCTTCGTCGTCAACCGCTATCCACTCTGCTAAATGTTCCATAGATCTCAACCTGCCAGCTCCGGCGGAAGAAGATGAACTAAGCGTGGTTTCTGATGCGTAA 903 0.4784 MERHKCKLCSRTFANGRALGGHMKAHLASLPLPPKPQSLITPSAPSFSYSSSDDDEEKVEVAPAYNRESDDKALSYGLRENPRKNLRFADPEFSFTVDAGSVVQDRESETESKNPTRRRSKRARKSSVGASQKFEVNKVKSNLTESPTEPEPVSSVSDTSPDEHVALCLMMLSRDKWMRNVVEQDQVVERLKGTEEIKLKRKHRSDNAKKTSRPSRALKTHHNSTFFPEEAETKIAGNNKIFQCPFCYKVFGTGQALGGHKRSHLLPSSSSTAIHSAKCSIDLNLPAPAEEDELSVVSDA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0546 300 MobiDBLite consensus disorder prediction 200 223 - -
Lele50g0546 300 MobiDBLite consensus disorder prediction 33 77 - -
Lele50g0546 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 242 264 IPR013087 -
Lele50g0546 300 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 300 IPR044303 GO:0006355
Lele50g0546 300 Pfam C2H2-type zinc finger 242 264 - -
Lele50g0546 300 Pfam C2H2-type zinc finger 3 28 - -
Lele50g0546 300 SMART c2h2final6 4 26 IPR013087 -
Lele50g0546 300 SMART c2h2final6 242 264 IPR013087 -
Lele50g0546 300 MobiDBLite consensus disorder prediction 130 160 - -
Lele50g0546 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lele50g0546 300 ProSitePatterns Zinc finger C2H2 type domain signature. 244 264 IPR013087 -
Lele50g0546 300 SUPERFAMILY beta-beta-alpha zinc fingers 3 264 IPR036236 -
Lele50g0546 300 MobiDBLite consensus disorder prediction 203 217 - -
Lele50g0546 300 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lele50g0546 300 MobiDBLite consensus disorder prediction 51 77 - -
Lele50g0546 300 MobiDBLite consensus disorder prediction 99 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0546 Lele-ChrLele50 3288733 3289635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0546 2 295 C2H2 Transcription Factor Family AT1G02030 36.760 6.00e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele50g0546 zf-C2H2_6 1.7e-07 CL0361