Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0533 ATGCAAATCATCGATCTTGGGAATGCATTTTGTGACTGGCATTGTCTCTATCGGGGGATCTTTGGTAACCCCCCTAGAGCTCATCACCACCGCCGCCTGGCCTTGTCTTGTCTGAGTATCTTGCCGTCGGTCTTCAACGAAGCTGGCATAAGAACTTTGGGTTTTGATTGTAAGAAGCCAGCATTAGAGATTGTGTTTGTTTCGTTCCCCAGGATGGAAGGTGTTGATTACTTGGCCCCCGAGAGGAACAAAGCTCAATTCGATGTCGAAGAGATGAAAATCGTCTGGGCTCGTTCTCGTGAAGCTTTTGAAGTTTCTGATCGAATGGCTAGCCCTGTTGCCAGCGATCCGGTATTCAGAAAGGATAATAGGCCCATGCTTGGCAGAAAAGAATTATTTAAGAACACTTTGAGGAAAGCACCTCATGCATGGAAAAGGATAATTGAGCTTCGCCTCACTGGCGAACCTGTTGATCTTTCTGTCGTTTGCATTTGGTTTCCAAGCCTGTTATTTTCTTCTAAAGAAGGCAATTTGTTGCCCATTGCAATTTCTATTTATCATGCTTTATACCCATGGAATGTTCATCCCAGCTATAAAGAGGAGCAGCAGCAGAAATGGTTGCCTTTGGCTTATAAGATGCAAATAATTGGTTGCTATGCCCAAACTGAACTTGGTCATGGATCCAATGTTCAAGGGCTCGAAACCACTGCAACCTTTGATCCTCAAACAGACGAGTTTTGGTGGCCTGGTGGATTGGGTAAAGTTTCCACACATGCTGTTGTCTATGCCCGTCTAATCACCAATGGTCCAGACCAAGGAGTGCGTGGCATAACTGTTGGGGATAGTGGAATGAAATTTGGAAATGGGGCATATAACTCTATGGATAATGGGGTTCTAAGATTTGATAATGTAAGAATTCCAAGGAATCAAATGTTGATGAGGTTAGTTCTTGTTACAAGAGAAGGAAAATGTGTCCAATCTAATGTTCCACTGCAATTAGTTTATGATACGATGGTATTTGTGAGACAATCAATTGTGTCTGATGCATCCAGTGCTTTGTCACGAGCAGTTTGCATTGCTACAAGATATAGTGCTGTTCGAAGACAGTTTGGCTCACACAATGGTGGTCTTGAAACACAGGTGATTGATTACAAAACTCAGCAAGCTAGGCTGTTTTCCTTGGTGGCTTCTGCTTCTGCTTTCAGATTCGTTGGTGAATGGTTGAAATGGCTGTATATGGATGTGACCCGAAGATTGCAGGCCAATGATTTTTCAACATTGCCTGAGGCTCATGCATGCACTGCAGGATTGAAGTCCTTGACTACATCAGCTACTGCGGATGGGATTGAAGAACCAAGTTATTTGCAGTATATGTTCCTACCTGCACTTATGAAGGAGACAATGTTGTGCTGCTTTTACAGTCTGATTTTGGTTTGCTATTGGATTAAATTCACTAAAGCTGAGGATTGGTTGAACGCTAATGTAGTGCTGGAAGCATTTGAAGCTAGGGATGCTCGGATTTTTTTCGACGCACGTTTTCAACAACTGTCAGCTGATTTAGTTGAGGCAGCAGTTGCTCACTGCCAGTTGATTGTGGTTTCCAAGCGAAATCTGGGCGATTTTCTCTCCACTGGCTGCATCACTGCCAAACAGGGTTCACTTGCCAACGATCAGCTGATGTCCTTGTATTCCCAGGTTCGCCCTAAAGCAATTGCGCTTGTGGATGCATTCAATTACACCGATCACTACCTTAGTTCGACTCTGGGTCGTTACGACGGAAATGTGTATCCAACGCTGTACGAGGAGGCATGGAAGGATCCTCTGAATGATTCGGTTGTGCCAGATGGTTACCAGGAATATGTTCGACCAATGCTGAAACAACAACTCCGGAATGGTAGACTCTAA 1905 0.4415 MQIIDLGNAFCDWHCLYRGIFGNPPRAHHHRRLALSCLSILPSVFNEAGIRTLGFDCKKPALEIVFVSFPRMEGVDYLAPERNKAQFDVEEMKIVWARSREAFEVSDRMASPVASDPVFRKDNRPMLGRKELFKNTLRKAPHAWKRIIELRLTGEPVDLSVVCIWFPSLLFSSKEGNLLPIAISIYHALYPWNVHPSYKEEQQQKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFWWPGGLGKVSTHAVVYARLITNGPDQGVRGITVGDSGMKFGNGAYNSMDNGVLRFDNVRIPRNQMLMRLVLVTREGKCVQSNVPLQLVYDTMVFVRQSIVSDASSALSRAVCIATRYSAVRRQFGSHNGGLETQVIDYKTQQARLFSLVASASAFRFVGEWLKWLYMDVTRRLQANDFSTLPEAHACTAGLKSLTTSATADGIEEPSYLQYMFLPALMKETMLCCFYSLILVCYWIKFTKAEDWLNANVVLEAFEARDARIFFDARFQQLSADLVEAAVAHCQLIVVSKRNLGDFLSTGCITAKQGSLANDQLMSLYSQVRPKAIALVDAFNYTDHYLSSTLGRYDGNVYPTLYEEAWKDPLNDSVVPDGYQEYVRPMLKQQLRNGRL 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0533 634 Gene3D - 88 216 IPR037069 GO:0016627|GO:0050660
Lele50g0533 634 Pfam Acyl-coenzyme A oxidase N-terminal 88 154 IPR029320 -
Lele50g0533 634 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 332 451 IPR036250 GO:0016627
Lele50g0533 634 Gene3D - 333 462 - -
Lele50g0533 634 PIRSF Acyl-CoA_oxidase 64 452 IPR012258 GO:0003997|GO:0005777|GO:0006631|GO:0071949
Lele50g0533 634 PIRSF Acyl-CoA_oxidase 497 629 IPR012258 GO:0003997|GO:0005777|GO:0006631|GO:0071949
Lele50g0533 634 Gene3D - 217 325 IPR046373 GO:0016627
Lele50g0533 634 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 484 627 IPR036250 GO:0016627
Lele50g0533 634 FunFam Acyl-coenzyme A oxidase 217 326 - -
Lele50g0533 634 Gene3D - 533 578 - -
Lele50g0533 634 PANTHER ELECTRON TRANSPORT OXIDOREDUCTASE 536 625 IPR012258 GO:0003997|GO:0005777|GO:0006631|GO:0071949
Lele50g0533 634 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 176 314 IPR009100 GO:0016627
Lele50g0533 634 FunFam Acyl-coenzyme A oxidase 88 216 - -
Lele50g0533 634 Pfam Acyl-CoA oxidase 535 626 IPR002655 GO:0003997|GO:0005777|GO:0006635
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0533 Lele-ChrLele50 3199740 3206259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0533 72 634 Acyl Lipid Metabolism Gene Families AT4G16760 58.198 0.0 707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0533 50 3199740 3206259 Lele53g0327 53 2838818 2839543 CCT
Lele50g0533 50 3199740 3206259 Lele54g0328 54 2848210 2849668 CCT
Lele50g0533 50 3199740 3206259 Lele55g1158 55 18142148 18142873 CCT
Lele50g0533 50 3199740 3206259 Lele56g1107 56 14548948 14550740 CCT
Lele50g0533 50 3199740 3206259 Lele51g0518 51 3054932 3060212 hybridization
Lele50g0533 50 3199740 3206259 Lele52g0533 52 3263481 3270443 hybridization