LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele50g0508	ATGGGAAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACCCCACTTTGGCGTAATGGCCCACCAGAGAAACCAGTATTATGCAATGCATGCGGTTCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCATTACATGCTCGGACAGAAACTGATGATTGTGAGGATCAAAGGTTTTCAAGGGTAAATAAGAACAAAGAAGTGAAATTGTCTAAACGAAAGCTGAACGAAGATAATTTATTTACTGGCGTGGCTGGCCTTGATTACAACCAAGGGTACCGGAAGGCTACAGATGAAGATACGAGCAATAGATCAAGTTCTGGTTCAGCTATCTCTAACTCAGAGAGTTGTGCTCAATTTGGTGGCACTGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAATTGTCTGGGATGCCATGGTGCCTTCAAAGAAGAGGACATGTGTGGGTCGTCCAAAGCAATCTTCTGTTGAGAAGCTTACAAAAGATCTGTACTCTATTCTTCATGAACAACAGTCTTATTTTTCCGCATCCTCTGAAGAGGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGGCATGGAAGCGTTCTTATTAGGCACCCAAGCTCTATAGCTCGTGAAGAAGAGTCTGAGGCCAGCTCTCTTTCAGTTGATAACAAACAATGCCCAACCAGTGAGGCATATTCATATTATGGTAACGCTCATGTGCATAATGGTTATAGCAGTGTGAATTTTCCATCTCAGGGGGTTCAAAAGATCAGGAGCTTTGCTGGCCAAGAAATGCTGCAAGAACAACTTAAGAGGGACAAGACTCAACATGATAAGGTTCAAATCCTTGGAAATAAGTCACCACTGTGCTCGGTAGATTTGAATGATGTCATTAACTATGATGAATTTATGAAGACTTTGACAAATGAAGAGCAGCAACAATTACTCCAGTGTCTCACTGCGGTTGATACTACAAAACTTCCTGATAGCCTGAAAAGCATGTTTAGTAGCTCTCAATTCAAGGAGAACTTGAATTATTTTCAGCAGCTTCTCGCAGAAGGTGTCTTTGATATCTCCTTATCAGGGACAAAACCTGAAGACTGCAAGACTTTGAAAAGGCTTGCATTGTCCAATCTGTCAAAATCAAAATGGGTGGAACATTATAACTTGCTTAAGAAACATAAGAACAGAGCTAGAAAATCTGTTGCTTCGGGTTCTTCTGGCACTGTATCTAATGATGCTGCAAATGTCAAGAGATATCATGACAGTCAAAGTAAAAATTTATCAGAATTGAAGACCACAATGAGGAGCCCTAAAAGGGTGATGATGAAGGTTGGCTGTGAGGGCAAGGAAGCTGAAGAATATGGGTCTTGTTTCAGTCCAAAAAGCCTATTTGCTTTGCCTTCTGATGGTGAGGCCCTCATGCTGGACTCTTTCACTTTTGTTGAAGAGAGTGGTGATCAGGACCTGCTGCTCGATGTGCCATCCAATGGTTCTTTTCCCGAGGCAGAGCTCCTGCACCCAACTTTAAGCTTTGGTGCTCAAGCCAGCACCAGTAGTAGCTCAATATACCCTCATATTCTCCATCCCTCATAA	1608	0.4254	MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDDCEDQRFSRVNKNKEVKLSKRKLNEDNLFTGVAGLDYNQGYRKATDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSIVWDAMVPSKKRTCVGRPKQSSVEKLTKDLYSILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQCPTSEAYSYYGNAHVHNGYSSVNFPSQGVQKIRSFAGQEMLQEQLKRDKTQHDKVQILGNKSPLCSVDLNDVINYDEFMKTLTNEEQQQLLQCLTAVDTTKLPDSLKSMFSSSQFKENLNYFQQLLAEGVFDISLSGTKPEDCKTLKRLALSNLSKSKWVEHYNLLKKHKNRARKSVASGSSGTVSNDAANVKRYHDSQSKNLSELKTTMRSPKRVMMKVGCEGKEAEEYGSCFSPKSLFALPSDGEALMLDSFTFVEESGDQDLLLDVPSNGSFPEAELLHPTLSFGAQASTSSSSIYPHILHPS	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele50g0508	535	MobiDBLite	consensus disorder prediction	105	119	-	-
	Lele50g0508	535	Gene3D	-	3	81	IPR013088	GO:0006355\|GO:0008270
	Lele50g0508	535	SMART	GATA_3	1	53	IPR000679	GO:0006355\|GO:0043565
	Lele50g0508	535	ProSitePatterns	GATA-type zinc finger domain.	7	32	IPR000679	GO:0006355\|GO:0043565
	Lele50g0508	535	ProSiteProfiles	DEUBAD (DEUBiquitinase ADaptor) domain profile.	289	401	IPR044867	-
	Lele50g0508	535	ProSiteProfiles	GATA-type zinc finger domain profile.	7	40	IPR000679	GO:0006355\|GO:0043565
	Lele50g0508	535	MobiDBLite	consensus disorder prediction	400	419	-	-
	Lele50g0508	535	CDD	ZnF_GATA	6	53	IPR000679	GO:0006355\|GO:0043565
	Lele50g0508	535	Pfam	Asx homology domain	276	368	IPR028020	-
	Lele50g0508	535	PANTHER	OSJNBB0038F03.10 PROTEIN	1	529	IPR044589	-
	Lele50g0508	535	Pfam	GATA zinc finger	7	41	IPR000679	GO:0006355\|GO:0043565
	Lele50g0508	535	Gene3D	-	282	382	IPR038108	-
	Lele50g0508	535	MobiDBLite	consensus disorder prediction	98	119	-	-
	Lele50g0508	535	MobiDBLite	consensus disorder prediction	405	419	-	-
	Lele50g0508	535	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	5	45	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele50g0508	Lele-ChrLele50	3020865	3025865	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele50g0508	1	511	C2C2-Gata Transcription Factor Family	AT4G17570	54.183	8.10e-167	481

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Lele50g0508		ASXH	3.6e-09	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele53g0313	53	2624880	2626457	Lele50g0508	50	3020865	3025865	CCT
	Lele54g0309	54	2632903	2634486	Lele50g0508	50	3020865	3025865	CCT
	Lele55g1177	55	18403073	18404653	Lele50g0508	50	3020865	3025865	CCT
	Lele56g1127	56	14763932	14765512	Lele50g0508	50	3020865	3025865	CCT
	Lele50g0508	50	3020865	3025865	Lele51g0492	51	2888962	2896415	hybridization
	Lele50g0508	50	3020865	3025865	Lele52g0509	52	3092844	3097837	hybridization