Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0506 ATGCATGACGATGGACCCAGCCGAAGACATTACTACTTAATCCACATGCAGATGACCAGGATATTCCAATGCCGAGTACAACGGACATGGAGTTGGCTGATGACGGGCAATAAAGGTGGCGTGTCCAGTTACGTGTGGCTGATTGGGCCTTTTCAATCATATGTGTATGTTGACTCAGCCATGAATGGTGCTGACGTGTCCTTCAACACGATTGCTGACTCCTCTGTTGACTGGACCTTTTTGATGATATGTCTCGGCAAGTGTCCACTGACTACTCTATTTACTGGATCTTTTTTTATTACATGTCCAGTTTTTCATGTGGTTGTCTCGATGGAGCTTCATTCTAAATGCCAGGTGGCCCTTGTTTGTGTGCTGCTCTTACCTGCACTATGCTTCTCCCAAGGCTTCACTGACTCCAGAGCCACCTTTTATAGTACCCCCGATGGCTATGGAACTCCAACCGGAGCTTGTGGATATGGAGATTACGGCAGAACTGTAAACCATGGTATGGTTGCCGGCGTGTCTGGCTTATGGAGAGGTGGCGCTGGCTGTGGCGCTTGCTACCAAGTAAGGTGCAAGAATTCGAGATTATGCGGTAACTACGGCGCCATGGTGGTGGCAACAGACTACGGTGCAGGAGACAGAACAGACTTCATTATGAGTCCCCATGCTTTCAAAGCTCTGGGACGAAACCCAAGTGCATCGGCGGAGCTGAAGAAATACGGCGTCGTAGACATAGAATACAGGAGGGTGCCCTGCACATATGCAGGTAAAAACGTGCGTATCAAGATCCACGAGTCCAGCAATTACCCATACTACCTTGCTCTTGTAATTCAATACGTGCCTGGAGTGAACGATGTCACTGATGTTGAGATATACGACAATGATAGGCATGAATGGAAGCCAATGAGAAGAGCGTACGGGGCAGTGTTTGATATAGCCGGCGCCCCAAGCGGACCATTAACGCTGAGGCTGCAACTCAGTGGAAGAAAAGGATGGCTACAGTCGACCAAGAGTGCAATTCCTAAGGATTGGAAGATTGGAGCTTCTTACGACTCTCAAGTTCATGTCTAA 1074 0.4851 MHDDGPSRRHYYLIHMQMTRIFQCRVQRTWSWLMTGNKGGVSSYVWLIGPFQSYVYVDSAMNGADVSFNTIADSSVDWTFLMICLGKCPLTTLFTGSFFITCPVFHVVVSMELHSKCQVALVCVLLLPALCFSQGFTDSRATFYSTPDGYGTPTGACGYGDYGRTVNHGMVAGVSGLWRGGAGCGACYQVRCKNSRLCGNYGAMVVATDYGAGDRTDFIMSPHAFKALGRNPSASAELKKYGVVDIEYRRVPCTYAGKNVRIKIHESSNYPYYLALVIQYVPGVNDVTDVEIYDNDRHEWKPMRRAYGAVFDIAGAPSGPLTLRLQLSGRKGWLQSTKSAIPKDWKIGASYDSQVHV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0506 357 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 154 258 IPR007112 -
Lele50g0506 357 SUPERFAMILY PHL pollen allergen 258 353 IPR036749 -
Lele50g0506 357 SUPERFAMILY Barwin-like endoglucanases 121 257 IPR036908 -
Lele50g0506 357 Gene3D - 129 253 IPR036908 -
Lele50g0506 357 Gene3D - 254 354 IPR036749 -
Lele50g0506 357 PRINTS Expansin/Lol pI family signature 300 314 IPR007118 GO:0005576
Lele50g0506 357 PRINTS Expansin/Lol pI family signature 339 353 IPR007118 GO:0005576
Lele50g0506 357 PRINTS Expansin/Lol pI family signature 174 192 IPR007118 GO:0005576
Lele50g0506 357 PRINTS Expansin/Lol pI family signature 241 257 IPR007118 GO:0005576
Lele50g0506 357 PRINTS Expansin/Lol pI family signature 135 150 IPR007118 GO:0005576
Lele50g0506 357 PANTHER EXPANSIN-B3 124 356 - -
Lele50g0506 357 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 272 353 IPR007117 -
Lele50g0506 357 Pfam Lytic transglycolase 171 248 IPR009009 -
Lele50g0506 357 Pfam Expansin C-terminal domain 260 337 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0506 Lele-ChrLele50 3010689 3014867 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0506 124 355 Expansin Gene Family AT4G17030 51.915 7.43e-81 245