LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele50g0486	ATGTATTGCGGCACGGGTGTGGCAGGAAGAACTCGGTCTAGACAAGGAATTATTGGAAAACAATACTTTGAGAATGATAACAAGTCTAGAAAACATGAGGCTGAGGAGATTGCATCTCAAGAAGAATGGTGCTCTAGCGATACTGTATCTGACGATGGTGAGGACAAAGATGTGATTTTGATCGAAGACATTATATCAGATAATGACACAATGAGGAGGACTCAGGAAGAATTCAGCCTTGACAGGCACTTACTGAGAAGGGTGAGGAGATTGGGTCTCAAGATACTGAGAAGGGTGAGGAAATTGTGTCTCAAGAAGGATGGTGTTCAAGCGATACTATGTCTTCTGATGGTGGTGTTGATTTGGTTTCGATCGAAAATGGGGACGATGAAGTCACACCGCATGGTGACGATGACGGTAGGAAAGGAGAATGAAACAATAAGAAGTTGCAGCCTCATCCGTCAGGAGGCTCTTCACAATGAGAAAAGAAATCCAAAAGTAACCCTTAAACGGAGAAGAAAGAAGTTTGATGGTTTCAAGATTCTTCCGAAGCACATTCGTGGTGAGGGAGTGGTGCTTTTTGAGAACTCAGCTTCCTCAAGTGGTGAGGAAGGAAATCCGAAAGATATGAGGAAGCGACCTGAGGTGTCACAGCCACCCGAGAAATTAGAGTCTGAGATTGAATTAAATGCAATACGGTGTGAGATGGCCGAAGCTCTCTGTGATGAGGACGGAATTCCAGAAGTGACCAAGGCATCTCTATCATCAAAATGTACTCTTAGTACTGAGGCGTCACAGCCTCTTGAGGAATTAGAGTCCGAGGAAGAATATCTATGGGATGAGATGGACAGGTGTCTTCAAAGTTGTGAAGAAGATAGTTCTGTTCAGGTTGAAAATGGTCATTGTGACGACCCATGTCCTGAAGGCGAAGTCAATGCAGCTACTTATTGTGCACGAGGGGATCATGATCTAATAATGAACGACGAAATTGGGGAATTGTGCAGACATTGCCTACATGTGACTCGGGAAATCAAATATATTGACCCAGAGTTTGCAAGTCAATTGACCTATCCGTATGACCTTGAGCGTGAAAGTTGTGGTTGTGATGATAACTCTTCCGGGTCTGTTACCTATACTTCCACTGGAACTGTGTGGGATATAATTCCACGAGCGAAAAGGAGTATGTACGATCATCAACAGGAAGCTTTTGAATATCGTTGGACCAACTTAGCTGGTGGAATAGTTCTTGAAGAGTTGGAAAAGCAGTTAGATTTTGCTAGTGGAAGTGGCTGCAGTATATCACACGCTCCTGGCACAGGCAAAACTTTTCTGACCATTGTCTTTCTCAGGGCTTTCATGAGTAGATATCCAAATTGCAGACCTATGATCATAGATCCAACCAACATTCTTCATGCATGGGAGAAAGAGTTGAAGAAGTGGGAGAAAATAGGTGTTCCTGTCCCTTTTCACAATTTGAACCAGCTTGATCTCTCTGGAGAGGAGACTGAATCTGCCATAAGATGTCTTCGGAGGCACGGTGGTCGTCGTCGTCGTCTTAGTGCACACAACAAGATTGAAATCCGTGGGGCAAAGTTTTATTCCTGGAAAGAGGCTACTAGCATCTTAGGAATTAGCTACACACTGTTTGATAGGCTTGCTAGAAAGGGCTCTGATGATGTAAAGAAAGCCCTTTTTGAATTTCAAGGATTAGTAGTTCTTGATGAAGGTCACACCCCTCGCAATGAAAATAGTCGAATATGGAAAGCCTTGTCAAAGATTGAGACTAAGAGACGCATCATACTCTCCGACAAAGTGGAGGGTGATAGGGAAAGAACTGAGGCAATTGCCAGAATCAGAGATGCGATCAAACCATTTGTGCATGTACATAAGGGTACAGTGCTACAAAAGAGTCTTCCTGGGTTGATGGAATCTCTTCTGTGGATCCTTCACTTCTTGTTGCTGAGCTCACTTGCTTACCAGAAAGAGAGAGCAACATTGAATGCCATAGTAGAAACACTAGAATCGTCCCCAGAGGATGGAGTCAAAACTAAGTTTGTTATGGACTCCATCCGGCAAAGCCAGCTTATGAAGGAAAAAGTTCTGATTTTTAGTCAGTATGTTGCTCCGCTGGTCTCTCTGGCAAAACTGATCAAATCTCGCTTTAATTGGAATGTAGGAGAGCGTATGATAGTAATTTATGGAAAGACCCATGAAGGGATACGTCAAGCCTCCATAGATGTATTCAATGATCCCAAAAGCAAAGCCAGGGCAGGCTGCGCTTATCGGATTGGACAGAAGAAAATCGTGTGCACTTACCGGCTGATAACTGCCGGGACATGGGATCAACAGAAGCTTTATATTCAAGCTGAGAAGGATCAGTTGTCTGAGATGGTGTTTTTCGGCTCCAATGAAGCTGGCCATCGCCAGAATACCTCACCTGTTGGTTTTGAAGATAAACTTTTGGAAAAGATGGGACGTAAATTTGGGGCAAAAATCACGAAGAGGGGAGTTACAATTTTGTTTGGAAGTGAAGAGTAG	2538	0.4362	MYCGTGVAGRTRSRQGIIGKQYFENDNKSRKHEAEEIASQEEWCSSDTVSDDGEDKDVILIEDIISDNDTMRRTQEEFSLDRHLLRRVRRLGLKILRRVRKLCLKKDGVQAILCLLMVVLIWFRSKMGTMKSHRMVTMTVGKENETIRSCSLIRQEALHNEKRNPKVTLKRRRKKFDGFKILPKHIRGEGVVLFENSASSSGEEGNPKDMRKRPEVSQPPEKLESEIELNAIRCEMAEALCDEDGIPEVTKASLSSKCTLSTEASQPLEELESEEEYLWDEMDRCLQSCEEDSSVQVENGHCDDPCPEGEVNAATYCARGDHDLIMNDEIGELCRHCLHVTREIKYIDPEFASQLTYPYDLERESCGCDDNSSGSVTYTSTGTVWDIIPRAKRSMYDHQQEAFEYRWTNLAGGIVLEELEKQLDFASGSGCSISHAPGTGKTFLTIVFLRAFMSRYPNCRPMIIDPTNILHAWEKELKKWEKIGVPVPFHNLNQLDLSGEETESAIRCLRRHGGRRRRLSAHNKIEIRGAKFYSWKEATSILGISYTLFDRLARKGSDDVKKALFEFQGLVVLDEGHTPRNENSRIWKALSKIETKRRIILSDKVEGDRERTEAIARIRDAIKPFVHVHKGTVLQKSLPGLMESLLWILHFLLLSSLAYQKERATLNAIVETLESSPEDGVKTKFVMDSIRQSQLMKEKVLIFSQYVAPLVSLAKLIKSRFNWNVGERMIVIYGKTHEGIRQASIDVFNDPKSKARAGCAYRIGQKKIVCTYRLITAGTWDQQKLYIQAEKDQLSEMVFFGSNEAGHRQNTSPVGFEDKLLEKMGRKFGAKITKRGVTILFGSEE	845

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele50g0486	845	Gene3D	-	758	836	IPR027417	-
	Lele50g0486	845	Gene3D	-	635	757	IPR027417	-
	Lele50g0486	845	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	665	756	IPR044567	GO:0080188
	Lele50g0486	845	MobiDBLite	consensus disorder prediction	197	223	-	-
	Lele50g0486	845	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	569	806	IPR027417	-
	Lele50g0486	845	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	385	602	IPR027417	-
	Lele50g0486	845	Pfam	SNF2-related domain	426	602	IPR000330	GO:0005524\|GO:0140658
	Lele50g0486	845	Gene3D	-	373	604	IPR038718	-
	Lele50g0486	845	MobiDBLite	consensus disorder prediction	205	223	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele50g0486	Lele-ChrLele50	2877940	2882251	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Lele50g0486		SNF2_N	1e-11	CL0023