Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0479 ATGGAATCTGGAGGCTTTCATGGCTACCGCAAGCTCCCTAACACTTCTTCTCCAGCATCAGTACCGGAGACGATGAACAACCACAACCACTCATCGTCCCCATCCACTGCTGCAGAAGACAATGAATGCACCGTGAGGGAGCAAGACAGGTTCATGCCGATCGCCAACGTCATCAGAATCATGCGCAAGATCCTCCCTCCACACGCCAAGATCTCCGACGATGCCAAGGAGACCATCCAGGAATGCGTGTCCGAGTACATCAGCTTCATCACCGGCGAGGCCAACGAGCGGTGCCAGAGGGAGCAGCGAAAGACGATCACTGCCGAGGACGTGCTGTGGGCCATGAGCAAGCTTGGCTTCGACGACTACATCGAGCCCCTGACCATGTACCTTCATCGGTACCGCGAGATGGAGGGTGATCGAGCCTCCATGCGGGGCGAGCCGCTAGGCAAGCGGACGGTGGAGCCAACTTATGGGGCTCCAGGGTTAGGTGCTTTTGTGCCGCCGTTTCACATGGGCCATCCGAATGGCTACTTTGGAGCCATGGGAGGGTACATGAGGGAGCATGCACAGAATAATAATGGAGGAGGGGGGTCTTCCTCACAAGCTGAACCAAATGGCCAATACAAGTGA 633 0.564 MESGGFHGYRKLPNTSSPASVPETMNNHNHSSSPSTAAEDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYREMEGDRASMRGEPLGKRTVEPTYGAPGLGAFVPPFHMGHPNGYFGAMGGYMREHAQNNNGGGGSSSQAEPNGQYK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0479 210 MobiDBLite consensus disorder prediction 13 41 - -
Lele50g0479 210 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Lele50g0479 210 MobiDBLite consensus disorder prediction 192 210 - -
Lele50g0479 210 SUPERFAMILY Histone-fold 48 148 IPR009072 GO:0046982
Lele50g0479 210 MobiDBLite consensus disorder prediction 1 44 - -
Lele50g0479 210 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 28 187 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele50g0479 210 MobiDBLite consensus disorder prediction 190 210 - -
Lele50g0479 210 Gene3D Histone, subunit A 38 155 IPR009072 GO:0046982
Lele50g0479 210 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele50g0479 210 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Lele50g0479 210 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Lele50g0479 210 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Lele50g0479 210 FunFam Nuclear transcription factor Y subunit B-6 40 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0479 Lele-ChrLele50 2839028 2841860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0479 1 178 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.386 1.09e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele50g0479 CBFD_NFYB_HMF 5.6e-26 CL0012