Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0462 ATGGTTTACCATTTTCTTCATACTGAAGGGGCTGAGAACGATGCCAAACCAGCTATGGTTTGTACTGCCAATGATTTACAAAGCTGGAAAGATTTTCCCAAGGGACTTAGGGTTCTTCTCCTTGATGGGGACACCAATTCTGCTGCCGATTTAAGATCAAAGCTTGAGGCCATGGACTATATTGTTTCTATATTTGGCGATGAGAACGAAGCCTTGTTGGCGATCTCAAGCAAACCTGAAGGCTTCCATGTTGCTATTGTGGAGGTTAGTACAAGCAATGACCAAGGATGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACATCAAACGATCATTGCCTCAGCACCATGATGAAGTGTATAGCACTTGGCGCAGTGGAGTTCCTAAGAAAACCGCTCTCAGAGGAAAAGCTCAAGAATATCTGGCAGCATGTGGTTCACAAGGCATTTAATGGTGGGGCGACCGTCCTTCCTGAATCACTAAAACCTGTCAAAGAATCTGTGGTATCAATATTGCAGCTCCAAACAGACAAGGAACAGCAAAGTAAAATCTCGATAGATATCGAGAAAGTATCGAGGTTTAGAGCAAATGATCATGAGTTGTCATCTGGGAGTGATAATAAATACCCAGCTCCTTCAACTCCACAATTAAAACAGGGGGCAAGATTACTGGATGATGGAGATTGCCATGAACAGACTCATTGCTTGACTGGAAAAGAAAGTGGAGAGCTGGATGGGGAAACTATATCTGTCGAAACTACATGTGGGAATTCCAATTCTGAGGGTGCCATGCCTCAACCAAGTAAGCCTGAAACGACCGAAATCAAGAAGGAAGAGGGTTTTGCCAATGGTTCTAAGAGTGAGAGTGATGCTTCTACACATATTCATGATGGAAATTTTGTCAGAAGCAATGGTGATAGTACTCCATCTCCCAAAAAAGTAGGTGTTTGCAGTGATGCATGCGAGATCACAGCTAATAAAAAGAAATCGAAGAAGATGAAGGTAGACTGGACGCCTGAACTGCACAGCAAATTTATTCAGGCAGTGGAACAACTTGGTATTGATCAAGCCATACCTTCTCGAATACTGGAGATAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCCAGCCATCTTCAGAAATATAGAATGCACAAGAGACATATTTTGCCGAAGGAAGAAGATCAAAGGTGGCCAAATCAAAGAGATATGATGCAAAGGAGCTACTATATACCAAGACCAATTATGGCCTATCCTCAGTATCATTCTAATCTCACCATATCTCCACCTCCTATGTATCCTATGTGGGGACAAGCGGGAAGTCAACCAGCCGGCGTACAGTTGTGGGGCCCACCTAGCTATCACGTATGGCAGCCTTTCCCAGGGATGCATGCAGAAGCATGGGGTTGCCCCGTGTTGCCACCTCAAAATCCTTGTTTTTCCCACACTCAACATATGCCTGGATTGCACAGTGCTAATAACGTTGAGTATAACTCTAGCATGCCTCCGAGTTTGTTGGAGCATCACCCGGCAGATGAAGTTGTTGACAAGGTTGTGAAGGAGGCAATAAACAAGCCATGGCTGCCCTTGCCCTTAGGTCTGAAACCTCCTTCCACAGATACTGTATTGGCTGAACTCTGTAGGCAAGGCATATCCACCATCCCTCACGGTTCTAAATCCACATAG 1701 0.4444 MVYHFLHTEGAENDAKPAMVCTANDLQSWKDFPKGLRVLLLDGDTNSAADLRSKLEAMDYIVSIFGDENEALLAISSKPEGFHVAIVEVSTSNDQGCFKFLENAKDLPTIMTSNDHCLSTMMKCIALGAVEFLRKPLSEEKLKNIWQHVVHKAFNGGATVLPESLKPVKESVVSILQLQTDKEQQSKISIDIEKVSRFRANDHELSSGSDNKYPAPSTPQLKQGARLLDDGDCHEQTHCLTGKESGELDGETISVETTCGNSNSEGAMPQPSKPETTEIKKEEGFANGSKSESDASTHIHDGNFVRSNGDSTPSPKKVGVCSDACEITANKKKSKKMKVDWTPELHSKFIQAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRMHKRHILPKEEDQRWPNQRDMMQRSYYIPRPIMAYPQYHSNLTISPPPMYPMWGQAGSQPAGVQLWGPPSYHVWQPFPGMHAEAWGCPVLPPQNPCFSHTQHMPGLHSANNVEYNSSMPPSLLEHHPADEVVDKVVKEAINKPWLPLPLGLKPPSTDTVLAELCRQGISTIPHGSKST 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0462 566 Gene3D - 36 155 - -
Lele50g0462 566 SUPERFAMILY Homeodomain-like 335 393 IPR009057 -
Lele50g0462 566 MobiDBLite consensus disorder prediction 300 315 - -
Lele50g0462 566 MobiDBLite consensus disorder prediction 257 271 - -
Lele50g0462 566 MobiDBLite consensus disorder prediction 257 318 - -
Lele50g0462 566 MobiDBLite consensus disorder prediction 275 299 - -
Lele50g0462 566 Gene3D - 332 394 - -
Lele50g0462 566 PANTHER TRANSCRIPTION ACTIVATOR GLK1 19 561 IPR044825 GO:0003700|GO:0045893
Lele50g0462 566 FunFam Two-component response regulator-like APRR2 35 161 - -
Lele50g0462 566 FunFam Two-component response regulator 332 395 - -
Lele50g0462 566 SUPERFAMILY CheY-like 34 151 IPR011006 -
Lele50g0462 566 Pfam Myb-like DNA-binding domain 339 388 IPR001005 -
Lele50g0462 566 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 333 392 IPR017930 -
Lele50g0462 566 ProSiteProfiles Response regulatory domain profile. 37 150 IPR001789 GO:0000160
Lele50g0462 566 CDD REC_typeB_ARR-like 38 150 - -
Lele50g0462 566 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 336 391 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0462 Lele-ChrLele50 2665104 2670780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0462 19 563 Response Regulator Gene Family AT4G18020 48.691 3.67e-142 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele50g0462 Myb_DNA-binding 1.2e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0462 50 2665104 2670780 Lele51g0444 51 2579970 2584987 hybridization
Lele50g0462 50 2665104 2670780 Lele52g0459 52 2738437 2744131 hybridization