Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0445 ATGGAATCAGGCGTCAGGCCGCTGAAATACCATCTGGGTCTCGACGATTCGACTCAAAGCCCGAATCCTGATTCACAACCTAACATCAAAACTACCCCTAATGGCGAGGAATGTGGCTGGGGTTACTGCACAGAAGAGCACTTGGAAGAAATTCTAATGAAAAACTTGGAGTATTTATACAATGAAGCTATATCAAAGCTTATTACATTGGGGTATGACGAGGACACTGCTTTAAAAGCAGTATTGCGAAACGGGCACTGTTATCATGGGGGGACGGATTTGCTGACAAATATATTGCAAAACTCGTTGGCTTATTTAAATAGTAATAGTGGTGGTTATAATACATGTAAATGCTATTTGGATGGGTCAGAGCCTGTCTTCTCAGACTTGAGGGAGTTGGAGGAGTACTCTCTAGCGGTTATGGTCTGCCTCTTGCAGCATTTAAGGCCGCATTTGAGTAAAGGTGATGCCATGTGGTGTTTAATTATGAGTGATCTTCATGTAGGAAAGGCTAACAAAATGAAAATCCCCGTGCTTCCTGAGCCAGGCGATGGTAATCCTTCTTCTTCTACAGTTGAAACTGTTAATTCAGTAGGTGTGATCACCCCTTCTCTTTGTAGGCTTCAAGGGAGCTGGGCATTTGAAAATAACGGAGACTCAGATTTCCCTGCCAATGGATTATTTTCTTGCGTTGCAAACAGGACTTTACAACGAGATATTGAATTCCCAAAGCATTTTAATCTCTCTCCTTCTATGAAGTCATTGTTGAAACGAAATGTGGCAGTGTTTGCTGCTGGTTTAAGGGCAAACTCAAAACAATTGCAGACAAAATCAAAAGCACGTCCTGGCAGTAGTTCTTCATCTAGTTTGGATTCTCCTCCTATACTGGGGACTAAGCCTCCAGTTGAGAAGTCAGGGGATTCTCAGAATCAAAATAACCAAGATGCTGTGAATTCAGTTCTTAGTAGATTTAGTGATCTAAATTTTGATGAGAATTTAGAGTCTCTGGCAGAAGACCAGAAGGAAGAGTTGACTTCCACTATACTCCATCAGATTAATGATCTTGAGAAACAGGTGCAGGAGCGAAAAGATTGGGCACATCTGAAGGCAATGCAAGCTGCAAGAAAGCTAAGCAGTGATCTGACTGAGCTGAAAATGCTAAGGATGGAAAGAGAAGAGTGTCAGAGATTGAATGAAGGGAAACAAGTCCTTGAGGACACAACGATGAAAAGACTTTCAGAAATGGAGATTGCACTGAGAAAGGCTAGCAGTCAAGTGGACCGTGCCAATGCAGCAGTGAGGAAACTTGAAACTGAAAATGCAGAGATCAAAGCAGAGATGGAGGCTTCTAAATTAAGTGCTTCAGAGTCAGTCTCAGCTTGTTTGCAAGTTGCAAAAAGAGAGAAAAAGTGCCTGAAGAGGCTTCTAGCTTGGGAAAAACAGAAAGCTAAGATAAAGGAGGAGATTTCAGATGAGAAAGATAAGATACTGGAGATGCAAAAAATGTTGGGTCGGATTAAACAATGTCAGAGAGAAGCTGAGATCAAGTGGAATGAGGAGTTGAGGGCTAAAGAGGAAGCGTCAACACTGTTTAAGGAGGAAAAGCGGTTGAAGGAAGAAGTAGAGGCTAATAATAAGAGGAAGCTTGAGGCTTTGCGGTTAAAGGTAGATATAGATTTCCAGCGCCACAAGGATGATTTCCTCAGACTTGAACAGGAACTCTCACGTCTTAAAGCATCTGATAGTCACCAATCAAATAGTTCACCTGCGGCTGAGTCTGAGGATGCAAAGCCCCAAAGAGAGACAATTGCTAATCTGCCTCAAGAATTAGATGAACTGGAGGAAATTTCCAAGAAAGAAGACAACTTGGATAGGGAATGCATTATGTGTAGAAAAGATGAAGTGTCTGTTGTATTCTTGCCGTGTGCCCATCAAGTGATGTGTGGTAGGTGCAGTGATGAGTATGGGATAAGTGGCAGTGCTGTTTGTCCTTGCTGCTCGGTTTCAATCGAACAGATGATCCGTGTATTTGGGCCAACTTCTTAG 2046 0.4242 MESGVRPLKYHLGLDDSTQSPNPDSQPNIKTTPNGEECGWGYCTEEHLEEILMKNLEYLYNEAISKLITLGYDEDTALKAVLRNGHCYHGGTDLLTNILQNSLAYLNSNSGGYNTCKCYLDGSEPVFSDLRELEEYSLAVMVCLLQHLRPHLSKGDAMWCLIMSDLHVGKANKMKIPVLPEPGDGNPSSSTVETVNSVGVITPSLCRLQGSWAFENNGDSDFPANGLFSCVANRTLQRDIEFPKHFNLSPSMKSLLKRNVAVFAAGLRANSKQLQTKSKARPGSSSSSSLDSPPILGTKPPVEKSGDSQNQNNQDAVNSVLSRFSDLNFDENLESLAEDQKEELTSTILHQINDLEKQVQERKDWAHLKAMQAARKLSSDLTELKMLRMEREECQRLNEGKQVLEDTTMKRLSEMEIALRKASSQVDRANAAVRKLETENAEIKAEMEASKLSASESVSACLQVAKREKKCLKRLLAWEKQKAKIKEEISDEKDKILEMQKMLGRIKQCQREAEIKWNEELRAKEEASTLFKEEKRLKEEVEANNKRKLEALRLKVDIDFQRHKDDFLRLEQELSRLKASDSHQSNSSPAAESEDAKPQRETIANLPQELDELEEISKKEDNLDRECIMCRKDEVSVVFLPCAHQVMCGRCSDEYGISGSAVCPCCSVSIEQMIRVFGPTS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0445 681 Coils Coil 524 551 - -
Lele50g0445 681 MobiDBLite consensus disorder prediction 15 33 - -
Lele50g0445 681 ProSiteProfiles Zinc finger RING-type profile. 627 667 IPR001841 -
Lele50g0445 681 MobiDBLite consensus disorder prediction 1 33 - -
Lele50g0445 681 Coils Coil 475 502 - -
Lele50g0445 681 MobiDBLite consensus disorder prediction 579 593 - -
Lele50g0445 681 Coils Coil 560 580 - -
Lele50g0445 681 PANTHER OS05G0141500 PROTEIN 29 676 IPR046934 -
Lele50g0445 681 Pfam Zinc finger, C3HC4 type (RING finger) 624 672 - -
Lele50g0445 681 Pfam Family of unknown function (DUF6592) 55 173 IPR046527 -
Lele50g0445 681 SUPERFAMILY RING/U-box 626 673 - -
Lele50g0445 681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 678 IPR013083 -
Lele50g0445 681 MobiDBLite consensus disorder prediction 272 313 - -
Lele50g0445 681 MobiDBLite consensus disorder prediction 272 294 - -
Lele50g0445 681 Coils Coil 412 453 - -
Lele50g0445 681 MobiDBLite consensus disorder prediction 578 600 - -
Lele50g0445 681 Coils Coil 606 626 - -
Lele50g0445 681 Coils Coil 387 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0445 Lele-ChrLele50 2545717 2548717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0445 601 677 C3H Transcription Factor Family AT1G73950 35.714 9.57e-06 46.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0445 50 2545717 2548717 Lele55g1231 55 18878555 18880553 CCT
Lele53g0264 53 2180479 2184092 Lele50g0445 50 2545717 2548717 CCT
Lele54g0267 54 2251463 2254345 Lele50g0445 50 2545717 2548717 CCT
Lele55g1223 55 18820784 18824421 Lele50g0445 50 2545717 2548717 CCT
Lele56g1170 56 15172523 15185089 Lele50g0445 50 2545717 2548717 CCT
Lele50g0445 50 2545717 2548717 Lele51g0427 51 2462470 2467478 hybridization
Lele50g0445 50 2545717 2548717 Lele52g0443 52 2622005 2625353 hybridization