Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0444 ATGTCCCGTGAGAGAAAGAGGAGCGTGGCAATGGTGCCATCACAGATCACGTGCATGCTTTTTCCACTTGCCCCTTATCCGACGGCCCCAGCTCCATATACTCCTCCAGCAAATGGTTCACAGAGTCAGCTTGTGTGTTCTGGGTGTAGAAACCTTCTAATGTATCCTGTTGGAGCCACCTCCGTTTGTTGCGCTGTTTGCAATGCAGTCACAGCTGTGCCTCCTCCTGGCACTGAAATGGCCCAGTTGGTTTGTGGAGGCTGCCACACTTTGCTCATGTACATTCGTGGAGCCACAAGTGTTCAATGCTCTTGTTGTCACACCGTCAATCTTGCTTTGGAAGCAAACCAGGTGGCCCATGTCAACTGTAGCAACTGCAGGATGCTACTCATGTATCAATATGGAGCAAGATCCGTTAAATGCGCTGTTTGCAATTTTGTGACGTCAGTTGGGGTCTCAGGAAGCACGACTGAGCAGAAGTTTAGTACGTAA 492 0.498 MSRERKRSVAMVPSQITCMLFPLAPYPTAPAPYTPPANGSQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCSNCRMLLMYQYGARSVKCAVCNFVTSVGVSGSTTEQKFST 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0444 163 Pfam LSD1 zinc finger 46 70 IPR005735 -
Lele50g0444 163 Pfam LSD1 zinc finger 85 109 IPR005735 -
Lele50g0444 163 Pfam LSD1 zinc finger 123 147 IPR005735 -
Lele50g0444 163 PANTHER PROTEIN LSD1 5 73 IPR040319 -
Lele50g0444 163 SUPERFAMILY Multiheme cytochromes 46 144 IPR036280 -
Lele50g0444 163 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Lele50g0444 163 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 120 150 IPR005735 -
Lele50g0444 163 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 82 111 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0444 Lele-ChrLele50 2539526 2541585 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lele50g0444 zf-LSD1 1e-11 No_clan