Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0441 ATGGATTCTCGGGAGCCACCCCAGCATTCGCCACCGCCACGCTCACAACCGCAACACTCATCAGCGCCACCGAGCATTATGATACCTCCTGGTTCTTTTTCCTCCACCATGCCCAACCCAATCCATTATTCCTTGATCAACCCCAATTCCTCGTCCATGCTGATGGCCCCTGCCACCGCCCGATTCCCCTTCCCCACATTTGTATCACAATCCCGTTCTCCCCCTCCTCCACCTCCATCGAAGCCTTCCGAATCTTTAAGAAACACTTCCCCTTACGAAGGCTCCTCCTCTGTGTTGAGGCCCTGCGGGTTGAGTATTGGTTCTCCGAAGAAGAGGGGCCGACCCAGGAAGTATTCGCCGGATGGTGGCATTGCTCTGGGTTTGTCTCCTACGCCTTTCTCTTCTTCTGCCCCCGCTGATTTGAGTGGCACTTCCGGGGAACCACCAGCTAAAAAGAGAAGGGGAAGGCCGCCGGGCTCTGGAAAGAAGCAACTGGATTCTCTTGGAGTTGGTGGGACATGCTTTATACCACATGTAATCTTGGTGAAAACTGGGGAGGACATTACAGCAAAGCTTATGTCTTTTTGTGAAGAAGGGTCACGCACAGTGTCTATTCTTTCTGCTAATGGTGCCGTCTGTAATGCCACCCTTCGACAGCCAGCTATGTCTGGCGGTACAGTGTACTACGAGGGTCGATATGAGATTATATCTTTATCGGGTTCTTTCAATCCATCTGAAGACGGTAGTTGTAGAACAGGTGGGTTGGGTGCCACTCTTGCGGGGACTGATGGAAAAATTGTGGGTGGTAGCGTTTCTGGAATGCTAATTGCAGCATCACCAATACAGGTCATTGTGGGTAGCTTCATTGTGGACGGGAAGAAAAAGTCGGGCTCAAAGGAGAAATCTGGGCCCTCCTCAGCAGCAACGCCCACGGGAACTCAAGTGTTGAATTTCGGTGCATCGCCTGTGACTCCAACCAATGCTACCTCTCAAGGGGGTTCAGGGGATTCTTCTGATGACGATGATGGTGGGTCTGGGTCTGGGTCAGGGTCAGGGTCAGGGTCAGGGTCAGGGTCTGGGTCTGGGAATGGGGCTGCACTCCACAGTAGTGTTAGCCAGCTCATTCCTAATATGCCATGGCATCATCAAGTATGGCCTCCGCAGCAGCGATGA 1173 0.5277 MDSREPPQHSPPPRSQPQHSSAPPSIMIPPGSFSSTMPNPIHYSLINPNSSSMLMAPATARFPFPTFVSQSRSPPPPPPSKPSESLRNTSPYEGSSSVLRPCGLSIGSPKKRGRPRKYSPDGGIALGLSPTPFSSSAPADLSGTSGEPPAKKRRGRPPGSGKKQLDSLGVGGTCFIPHVILVKTGEDITAKLMSFCEEGSRTVSILSANGAVCNATLRQPAMSGGTVYYEGRYEIISLSGSFNPSEDGSCRTGGLGATLAGTDGKIVGGSVSGMLIAASPIQVIVGSFIVDGKKKSGSKEKSGPSSAATPTGTQVLNFGASPVTPTNATSQGGSGDSSDDDDGGSGSGSGSGSGSGSGSGSGNGAALHSSVSQLIPNMPWHHQVWPPQQR 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0441 390 SUPERFAMILY AF0104/ALDC/Ptd012-like 176 289 - -
Lele50g0441 390 SMART AT_hook_2 151 163 IPR017956 GO:0003677
Lele50g0441 390 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Lele50g0441 390 CDD DUF296 177 288 IPR005175 -
Lele50g0441 390 MobiDBLite consensus disorder prediction 1 42 - -
Lele50g0441 390 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 73 342 IPR039605 GO:0003680
Lele50g0441 390 Pfam Plants and Prokaryotes Conserved (PCC) domain 177 288 IPR005175 -
Lele50g0441 390 Gene3D - 177 302 - -
Lele50g0441 390 MobiDBLite consensus disorder prediction 301 377 - -
Lele50g0441 390 MobiDBLite consensus disorder prediction 65 167 - -
Lele50g0441 390 MobiDBLite consensus disorder prediction 294 390 - -
Lele50g0441 390 MobiDBLite consensus disorder prediction 69 84 - -
Lele50g0441 390 ProSiteProfiles PPC domain profile profile. 172 310 IPR005175 -
Lele50g0441 390 MobiDBLite consensus disorder prediction 20 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0441 Lele-ChrLele50 2520304 2524490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0441 110 319 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 51.667 1.03e-60 201