Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0438 ATGTCTGTAACACAAACCATCGCTCCTCCAGAGATCGGTGCCCTTGTTTCGTCGTCGTCGTCCATGACCCAAGACCCTCCGAATCACCCAACAAACCCTAACGCCTTGATGTCGTGGAACCCTGAAGAAGACGACTCATGGGAGGTCAGAGCTTTTGCGGAAGATACACGAAACGTCATGGGCACCACTTGGCCTCCCAGGTCCTACACCTGCACTTTCTGCAGAAGGGAGTTCCGTTCCGCCCAAGCTCTCGGCGGTCACATGAACGTCCACCGCCGCGACCGGGCTCGGCTCCACCAACTCCACCCAAACTCTAATTCTTTTATACTCCCTCCACAAGACCTTGTTCCTAGTCATGGATTGTGCCTTCTCTATCGTTTACCACCAACCCCTAATAATCCCACTTTTGCCTTCGCCAACAGTTCTGGTCCTTCTCTCACTGATCCGAATGCTTGTGGAGAATCACCTTCCACGATTCTCTCCGTCTCGCCTTATCCGGCAAACGAGTTCGATTTTAATTCGGTGCTACGATCTGGCTGTAATATTTCTTCTTACTCTAATAACTCCACCAAAGTGGAACTGCCCATCACCAACTCCTCCTATGATGGCCACGAAGAGCTTGATCTTGAGCTCCGGCTAGGCCACAGGCCAACGCCGACTGATAAAGCCCATTAA 675 0.5185 MSVTQTIAPPEIGALVSSSSSMTQDPPNHPTNPNALMSWNPEEDDSWEVRAFAEDTRNVMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQLHPNSNSFILPPQDLVPSHGLCLLYRLPPTPNNPTFAFANSSGPSLTDPNACGESPSTILSVSPYPANEFDFNSVLRSGCNISSYSNNSTKVELPITNSSYDGHEELDLELRLGHRPTPTDKAH 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0438 224 SMART c2h2final6 69 91 IPR013087 -
Lele50g0438 224 PANTHER OS07G0101800 PROTEIN 42 217 - -
Lele50g0438 224 SUPERFAMILY beta-beta-alpha zinc fingers 66 96 IPR036236 -
Lele50g0438 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Lele50g0438 224 Pfam C2H2-type zinc finger 69 93 - -
Lele50g0438 224 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Lele50g0438 224 Gene3D Classic Zinc Finger 59 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0438 Lele-ChrLele50 2496917 2497591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0438 32 217 C2H2 Transcription Factor Family AT4G17810 41.919 5.42e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele50g0438 zf-C2H2_6 4.6e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0438 50 2496917 2497591 Lele50g0438 50 2496917 2497591 ECH
Lele50g0438 50 2496917 2497591 Lele51g0417 51 2404795 2405457 hybridization
Lele50g0438 50 2496917 2497591 Lele52g0435 52 2568604 2569266 hybridization