Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0431 ATGTTCGAGCACCAGTACCCAGTGGATTGTATGACGTACGAGGTTGATGACTTTCAGGATTTGTCGGGATACGGAGACAGTTACTCATGTTTCAACTCCAAAAGAAGCCCCGATGACTGGTTCACAGTGGAGAGCCCAGAATCGGTTGCGGAACAAAGACCAACCAAGCAACCCAAGAGCACCAACAACAATAGCTGGACCTCTTGCACCACAACAACAATGGCTGACCCCATCATCCCTTCCAACCATTCTGCTTCTAATTCCACCTCCCAGATCATTTCTTTCGAGAACTCTAATTCTTCCCCAGACGTCGCTTCTCACCAATTTTACAGCTGGGATTCTAGCACTGTTTTCAAGCCTAAAACCGAGACCATTTTCTCTTCTGACAACTTGGATTTCAGTGCTCCATTCTCCATTTCTCCACCCACCTATGACCACAAACCTGATTCCGTTTTGCTCCCACATGAGAATAAAACTGCCACCGTTACCAGAAATCCCATTCAAGCTCAAGATCACGTCATGGCCGAAAGAAAACGAAGGGAGAAGCTCACCCAGAGGTTTATTGCTCTTTCCGCCATTCTTCCTGGCCTCAAAAAGATGGACAAGGCTTCAGTGCTAGGAGATGCTATCAACTATGTGAAACAACTGCAGGAGCGCGTGAAAACTCTGGAGGATCGGGTAAACAAGAAAGCAGTGGAAACCGCGGTGTTTGTGAACAGGTCTGTTCTCCATGCCGACGACGATGGCTCCTCCTCCGATGAAAATTCCAACAGCGGCTCTGTCCAGCCGCTGCCCGAAATCGAAGCAAGAGTTTCGGGCAAGGATGTACTCATCAGAATCCACTGCGACAAACAAAATGGATATTGTGCCAACATACTCTCCCAGTTACAACATCTCCATCTCACTATCCAAAGTAGCAGCTTCTTGCCCTTTGGAGATTCCACTCTTGATATTACTATTGTTGCTCAGATGAACAAGGAAGAGTGCATGACAGCAAAAGATATAGTAAGCAGCCTGAGCCATGGTCTGAGGCAATTAAATTGA 1044 0.4703 MFEHQYPVDCMTYEVDDFQDLSGYGDSYSCFNSKRSPDDWFTVESPESVAEQRPTKQPKSTNNNSWTSCTTTTMADPIIPSNHSASNSTSQIISFENSNSSPDVASHQFYSWDSSTVFKPKTETIFSSDNLDFSAPFSISPPTYDHKPDSVLLPHENKTATVTRNPIQAQDHVMAERKRREKLTQRFIALSAILPGLKKMDKASVLGDAINYVKQLQERVKTLEDRVNKKAVETAVFVNRSVLHADDDGSSSDENSNSGSVQPLPEIEARVSGKDVLIRIHCDKQNGYCANILSQLQHLHLTIQSSSFLPFGDSTLDITIVAQMNKEECMTAKDIVSSLSHGLRQLN 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0431 347 MobiDBLite consensus disorder prediction 48 69 - -
Lele50g0431 347 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983
Lele50g0431 347 MobiDBLite consensus disorder prediction 245 265 - -
Lele50g0431 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Lele50g0431 347 Coils Coil 206 233 - -
Lele50g0431 347 PANTHER BHLH TRANSCRIPTION FACTOR 48 344 - -
Lele50g0431 347 Gene3D - 158 231 IPR036638 GO:0046983
Lele50g0431 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 234 IPR036638 GO:0046983
Lele50g0431 347 MobiDBLite consensus disorder prediction 45 69 - -
Lele50g0431 347 SMART finulus 173 222 IPR011598 GO:0046983
Lele50g0431 347 CDD bHLH_AtNAI1_like 169 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0431 Lele-ChrLele50 2452972 2454245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0431 82 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.586 1.07e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele50g0431 HLH 6.7e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0431 50 2452972 2454245 Lele53g0243 53 2015061 2016371 CCT
Lele50g0431 50 2452972 2454245 Lele54g0249 54 2091292 2092448 CCT
Lele50g0431 50 2452972 2454245 Lele55g1241 55 18979808 18980969 CCT
Lele50g0431 50 2452972 2454245 Lele56g1189 56 15357304 15358465 CCT
Lele50g0431 50 2452972 2454245 Lele51g0412 51 2379193 2380656 hybridization
Lele50g0431 50 2452972 2454245 Lele52g0429 52 2524146 2527913 hybridization