Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0418 ATGGGTTTTGGTGATACTTCCACTACCCCTGTCCTTCACCTTCTTCTAGGCTTAGGTATGACCGGTCCTCCGTCCAAGGCTGACCATCATACTAGGCCTACCAAGAGCTCCTGCAATTTCACGCCAACAACTAGCTGTGAGCCATCTTTAACCTTGGCTCTTTCCGACGACACTCACCAACAAGTCCCCAAAAAGGTTAACGTCAACAGAAGTTGCAAGGATCCTCTTGACTTTTCTCGCCAAGAATCGCCTCACAGTGCCGTATCGTATTTCTCCAGTGGGAGGGTGAAGAGGGAGAGAGATCTCAGCAATAATGAAGAGGTCGATGCGGCGGAGAGGGTTTCCTCCAGAGGGAGCGACGAAGACGAAGACGGGACCAATGCCAGAAAGAAGCTCAGACTCACCAAAGAACAATCTGCCCTGCTAGAGGAAAGCTTCAAACAACATAGCACCCTCAATCCTTTACAGAAGCAGAAGCAGGCATTAGCCGGGCAGCTAAATCTGAGGCCGAGACAAGTTGAGGTGTGGTTCCAAAATAGGAGGGCCAGGACAAAGCTGAAGCAGACGGAGGTGGACTGCGAATTCTTAAAGAAATGCTGCGAGACGCTGACGGGTGAAAACAGGAGGCTGCGGAAGGAGGTGCAAGAGCTGAAGGCCCTGGAGCTAGCCCAACCTCTGTACATGGCGATGCCGGCGGCCACGCTCACCATGTGCCCGTCCTGCGAGAGGCTGGGCAGGGTCTACAGCGACGGCTCTTCTAATGACAAGACCGCCTTCTCCATGGCTCCCAAACCTCATTTCTACACGGCCTTCCCCAATCCTTCGGCGGCATGCTGA 837 0.5352 MGFGDTSTTPVLHLLLGLGMTGPPSKADHHTRPTKSSCNFTPTTSCEPSLTLALSDDTHQQVPKKVNVNRSCKDPLDFSRQESPHSAVSYFSSGRVKRERDLSNNEEVDAAERVSSRGSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPLQKQKQALAGQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTGENRRLRKEVQELKALELAQPLYMAMPAATLTMCPSCERLGRVYSDGSSNDKTAFSMAPKPHFYTAFPNPSAAC 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0418 278 SMART halz 187 230 IPR003106 GO:0006355|GO:0043565
Lele50g0418 278 CDD homeodomain 129 188 IPR001356 GO:0003677
Lele50g0418 278 Coils Coil 200 223 - -
Lele50g0418 278 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981|GO:0006355
Lele50g0418 278 MobiDBLite consensus disorder prediction 94 131 - -
Lele50g0418 278 SMART HOX_1 127 191 IPR001356 GO:0003677
Lele50g0418 278 MobiDBLite consensus disorder prediction 22 45 - -
Lele50g0418 278 Gene3D - 133 185 - -
Lele50g0418 278 ProSiteProfiles 'Homeobox' domain profile. 125 187 IPR001356 GO:0003677
Lele50g0418 278 Pfam Homeodomain 129 185 IPR001356 GO:0003677
Lele50g0418 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 17 257 - -
Lele50g0418 278 Pfam Homeobox associated leucine zipper 187 220 IPR003106 GO:0006355|GO:0043565
Lele50g0418 278 SUPERFAMILY Homeodomain-like 118 188 IPR009057 -
Lele50g0418 278 MobiDBLite consensus disorder prediction 75 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0418 Lele-ChrLele50 2381944 2383080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0418 1 278 Homeobox Transcription Factor Family AT4G37790 57.732 3.07e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele50g0418 Homeodomain 2e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0418 50 2381944 2383080 Lele51g0400 51 2315929 2317101 hybridization
Lele50g0418 50 2381944 2383080 Lele52g0416 52 2468748 2470809 hybridization